miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 110285 0.66 0.921379
Target:  5'- gGCGGGCGGacUGgcGgcGGCugucGCCCGCGCg -3'
miRNA:   3'- aCGUCUGCC--ACuuC--UCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 35584 0.66 0.921379
Target:  5'- cGCcGGCGccgaGggGAGCGCCCccggccCGCCg -3'
miRNA:   3'- aCGuCUGCca--CuuCUCGUGGGu-----GUGG- -5'
21384 5' -55 NC_004812.1 + 95794 0.66 0.921379
Target:  5'- gGCGGugcUGGUGAAGugacCGCCC-CGCCc -3'
miRNA:   3'- aCGUCu--GCCACUUCuc--GUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 517 0.66 0.921379
Target:  5'- cGCGGcCGG-GgcGGGC-CCgCGCGCCc -3'
miRNA:   3'- aCGUCuGCCaCuuCUCGuGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 4683 0.66 0.921379
Target:  5'- cGCcGGCGccgaGggGAGCGCCCccggccCGCCg -3'
miRNA:   3'- aCGuCUGCca--CuuCUCGUGGGu-----GUGG- -5'
21384 5' -55 NC_004812.1 + 14278 0.66 0.921379
Target:  5'- cGCAcGGCGGUcgccGAaucaguAGGGCGCgccccgCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCA----CU------UCUCGUG------GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 84092 0.66 0.921379
Target:  5'- aGCgGGACGGcGAccGAGCGCCgC-CGCCu -3'
miRNA:   3'- aCG-UCUGCCaCUu-CUCGUGG-GuGUGG- -5'
21384 5' -55 NC_004812.1 + 36915 0.66 0.921379
Target:  5'- gGgGGACGGUGccGccAGCuCCCGCAgCCc -3'
miRNA:   3'- aCgUCUGCCACuuC--UCGuGGGUGU-GG- -5'
21384 5' -55 NC_004812.1 + 83196 0.66 0.921379
Target:  5'- cGCGG-CGG-GAGGcgcGGCGgCCGCGCUc -3'
miRNA:   3'- aCGUCuGCCaCUUC---UCGUgGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 122453 0.66 0.920819
Target:  5'- -uCGGGCGGcgGggGcgcgGGCGCCCcuggcggGCGCCg -3'
miRNA:   3'- acGUCUGCCa-CuuC----UCGUGGG-------UGUGG- -5'
21384 5' -55 NC_004812.1 + 119026 0.66 0.920819
Target:  5'- cGCGGGCGGccaccggcccgucUacguGgcGGGCugCCACAUCg -3'
miRNA:   3'- aCGUCUGCC-------------A----CuuCUCGugGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 153354 0.66 0.920819
Target:  5'- -uCGGGCGGcgGggGcgcgGGCGCCCcuggcggGCGCCg -3'
miRNA:   3'- acGUCUGCCa-CuuC----UCGUGGG-------UGUGG- -5'
21384 5' -55 NC_004812.1 + 52349 0.66 0.920819
Target:  5'- cGCcccGGCGGgucguuagaaaucUGggGGcGCGCCgCGCACCu -3'
miRNA:   3'- aCGu--CUGCC-------------ACuuCU-CGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 102885 0.67 0.915662
Target:  5'- cGUGGGCuGGgacuGGGCGCCCaaGCGCCc -3'
miRNA:   3'- aCGUCUG-CCacuuCUCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 50138 0.67 0.915662
Target:  5'- -aCGGGuuCGcGUGggGGGCGCCCGgcuccgucCGCCg -3'
miRNA:   3'- acGUCU--GC-CACuuCUCGUGGGU--------GUGG- -5'
21384 5' -55 NC_004812.1 + 77238 0.67 0.915662
Target:  5'- cGCGGG-GGUGuGGGGCgcuGCCCucgcggggGCGCCg -3'
miRNA:   3'- aCGUCUgCCACuUCUCG---UGGG--------UGUGG- -5'
21384 5' -55 NC_004812.1 + 3135 0.67 0.915662
Target:  5'- gGCAG-CGGcGcguAGAGCACCaGCACg -3'
miRNA:   3'- aCGUCuGCCaCu--UCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 156265 0.67 0.915662
Target:  5'- aGU-GAgGGUGgcGAGCGCguggaCGCACCu -3'
miRNA:   3'- aCGuCUgCCACuuCUCGUGg----GUGUGG- -5'
21384 5' -55 NC_004812.1 + 146463 0.67 0.915662
Target:  5'- cGCAGGCuGG-GggGGGUgggcguaccggGCCuCACGCUg -3'
miRNA:   3'- aCGUCUG-CCaCuuCUCG-----------UGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 81638 0.67 0.915662
Target:  5'- cGCGcGGCGcGUcuucGAGGcGCACCCGCugACCg -3'
miRNA:   3'- aCGU-CUGC-CA----CUUCuCGUGGGUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.