miRNA display CGI


Results 101 - 120 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 50138 0.67 0.915662
Target:  5'- -aCGGGuuCGcGUGggGGGCGCCCGgcuccgucCGCCg -3'
miRNA:   3'- acGUCU--GC-CACuuCUCGUGGGU--------GUGG- -5'
21384 5' -55 NC_004812.1 + 47840 0.67 0.915662
Target:  5'- gGCGGugGGggagggggaGAGGGGCGCUCGgucgguuuuaacCGCCc -3'
miRNA:   3'- aCGUCugCCa--------CUUCUCGUGGGU------------GUGG- -5'
21384 5' -55 NC_004812.1 + 114572 0.67 0.915662
Target:  5'- cGCuGACGGUcGugcgcuuGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGuCUGCCA-Cuuc----UCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 22935 0.67 0.915662
Target:  5'- cGCcuGGACGcccaGAGucuguGGGCACCUACGCCg -3'
miRNA:   3'- aCG--UCUGCca--CUU-----CUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 106505 0.67 0.915662
Target:  5'- cGCGGguccGCGGcGcGGGGCGCCgGCgGCCg -3'
miRNA:   3'- aCGUC----UGCCaCuUCUCGUGGgUG-UGG- -5'
21384 5' -55 NC_004812.1 + 156265 0.67 0.915662
Target:  5'- aGU-GAgGGUGgcGAGCGCguggaCGCACCu -3'
miRNA:   3'- aCGuCUgCCACuuCUCGUGg----GUGUGG- -5'
21384 5' -55 NC_004812.1 + 97521 0.67 0.915662
Target:  5'- aGcCAGuCGGUcGAGGGGCGCaacuuCCGCaACCa -3'
miRNA:   3'- aC-GUCuGCCA-CUUCUCGUG-----GGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 100925 0.67 0.915662
Target:  5'- cGCgaGGACGGgccGGAGAGCuggGCCgacguggcggggCGCGCCg -3'
miRNA:   3'- aCG--UCUGCCa--CUUCUCG---UGG------------GUGUGG- -5'
21384 5' -55 NC_004812.1 + 3135 0.67 0.915662
Target:  5'- gGCAG-CGGcGcguAGAGCACCaGCACg -3'
miRNA:   3'- aCGUCuGCCaCu--UCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 146463 0.67 0.915662
Target:  5'- cGCAGGCuGG-GggGGGUgggcguaccggGCCuCACGCUg -3'
miRNA:   3'- aCGUCUG-CCaCuuCUCG-----------UGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 125081 0.67 0.915662
Target:  5'- gUGCAGACcgcgugccuccgGGcgcUGggGAGCGCCauccgaGCCg -3'
miRNA:   3'- -ACGUCUG------------CC---ACuuCUCGUGGgug---UGG- -5'
21384 5' -55 NC_004812.1 + 77238 0.67 0.915662
Target:  5'- cGCGGG-GGUGuGGGGCgcuGCCCucgcggggGCGCCg -3'
miRNA:   3'- aCGUCUgCCACuUCUCG---UGGG--------UGUGG- -5'
21384 5' -55 NC_004812.1 + 136296 0.67 0.915662
Target:  5'- gUGgGGGCGGUGccu-GCGCgCGCGCUg -3'
miRNA:   3'- -ACgUCUGCCACuucuCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 122564 0.67 0.9139
Target:  5'- gGgGGGCGGaGggGAGCgcggcggccgcgacACCCucccCACCa -3'
miRNA:   3'- aCgUCUGCCaCuuCUCG--------------UGGGu---GUGG- -5'
21384 5' -55 NC_004812.1 + 153465 0.67 0.9139
Target:  5'- gGgGGGCGGaGggGAGCgcggcggccgcgacACCCucccCACCa -3'
miRNA:   3'- aCgUCUGCCaCuuCUCG--------------UGGGu---GUGG- -5'
21384 5' -55 NC_004812.1 + 122256 0.67 0.912116
Target:  5'- cGCGGGCGGggGGccacggggaccacggGGGGCGCggCgGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU---------------UCUCGUG--GgUGUGG- -5'
21384 5' -55 NC_004812.1 + 153157 0.67 0.912116
Target:  5'- cGCGGGCGGggGGccacggggaccacggGGGGCGCggCgGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU---------------UCUCGUG--GgUGUGG- -5'
21384 5' -55 NC_004812.1 + 5508 0.67 0.909705
Target:  5'- gGCGGccGCGGgGAAG-GCGuCCC-CGCCg -3'
miRNA:   3'- aCGUC--UGCCaCUUCuCGU-GGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 93854 0.67 0.909705
Target:  5'- cGCAGA-GGUcgcGggGGGCccggcaGCCCAgcCGCCg -3'
miRNA:   3'- aCGUCUgCCA---CuuCUCG------UGGGU--GUGG- -5'
21384 5' -55 NC_004812.1 + 41755 0.67 0.909705
Target:  5'- uUGUuGugGGgcUGggGcuuGGCGCgCCGCGCCu -3'
miRNA:   3'- -ACGuCugCC--ACuuC---UCGUG-GGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.