miRNA display CGI


Results 61 - 80 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 20593 0.67 0.903508
Target:  5'- -cCGGcCGGUGgcGAGgACgCGCGCCu -3'
miRNA:   3'- acGUCuGCCACuuCUCgUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 20601 0.68 0.869047
Target:  5'- cGCGGGCGG-GGcgcccgcucAGGGCguccgucacGCgCCGCACCg -3'
miRNA:   3'- aCGUCUGCCaCU---------UCUCG---------UG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 21090 0.67 0.909096
Target:  5'- gGCcgAGGCGGcGAAGAcgccgacagagccGCACCCA-GCCa -3'
miRNA:   3'- aCG--UCUGCCaCUUCU-------------CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 22159 0.67 0.897729
Target:  5'- cGCAGGCGGuUGgcG-GCGCCgugcggaucggcggaGCGCCg -3'
miRNA:   3'- aCGUCUGCC-ACuuCuCGUGGg--------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 22935 0.67 0.915662
Target:  5'- cGCcuGGACGcccaGAGucuguGGGCACCUACGCCg -3'
miRNA:   3'- aCG--UCUGCca--CUU-----CUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23480 0.72 0.686969
Target:  5'- cUGCuGGCGGUGGucgaGGGGCugCUgucGCACUa -3'
miRNA:   3'- -ACGuCUGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 23531 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23574 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 24445 0.66 0.941831
Target:  5'- gGCGGuugcuCGGguuGGGGCguuGCCCGCugCa -3'
miRNA:   3'- aCGUCu----GCCacuUCUCG---UGGGUGugG- -5'
21384 5' -55 NC_004812.1 + 24493 0.71 0.737084
Target:  5'- cGCuccuGGACGG---GGGGCcCCCGCGCCg -3'
miRNA:   3'- aCG----UCUGCCacuUCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 25216 0.68 0.87639
Target:  5'- gGCGGACGGgguauaUGAGGccGGCGaCCGCGCg -3'
miRNA:   3'- aCGUCUGCC------ACUUC--UCGUgGGUGUGg -5'
21384 5' -55 NC_004812.1 + 25457 0.68 0.84575
Target:  5'- gGCGGACGcGgggagGAAGAGa--CCAUGCCg -3'
miRNA:   3'- aCGUCUGC-Ca----CUUCUCgugGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 25881 0.68 0.88069
Target:  5'- gGCGGcCGGcccucccgcGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCuGCCacuuc----UCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 26014 0.69 0.820689
Target:  5'- -cCAGGCGGgcccgGAGGGGC-UCCACGuCCa -3'
miRNA:   3'- acGUCUGCCa----CUUCUCGuGGGUGU-GG- -5'
21384 5' -55 NC_004812.1 + 26025 0.65 0.946343
Target:  5'- cGCGGACGGcGAcggcggggccGGGGCcgggggcgcggcGCCCucgcGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCU----------UCUCG------------UGGG----UGUGG- -5'
21384 5' -55 NC_004812.1 + 27461 0.7 0.766119
Target:  5'- cGCAGACGc-GGGcGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCUUcUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 27550 0.67 0.903508
Target:  5'- cGCcGGCGcGcaaGAAGAGCcgGCCCgGCGCCg -3'
miRNA:   3'- aCGuCUGC-Ca--CUUCUCG--UGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 28492 0.7 0.794069
Target:  5'- gGCGGGCGGggaAAGGGgGCuCCGCgGCCa -3'
miRNA:   3'- aCGUCUGCCac-UUCUCgUG-GGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 28635 0.67 0.909705
Target:  5'- aGCAG-CGGaUGggGGccuccgacGCGCCCGCcggacuggcgGCCg -3'
miRNA:   3'- aCGUCuGCC-ACuuCU--------CGUGGGUG----------UGG- -5'
21384 5' -55 NC_004812.1 + 28655 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.