miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 29033 0.7 0.784888
Target:  5'- gGUAGACGc-GggGGGCGcgcccccuccCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCuuCUCGU----------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 29230 0.7 0.775569
Target:  5'- gGCGGGCGGgggucgcgGAGGAGCggGCCgGgGCUg -3'
miRNA:   3'- aCGUCUGCCa-------CUUCUCG--UGGgUgUGG- -5'
21384 5' -55 NC_004812.1 + 29790 0.7 0.784888
Target:  5'- gGCGcGGCGGggcccgGggGucGGCGCCC-CGCCu -3'
miRNA:   3'- aCGU-CUGCCa-----CuuC--UCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 29937 0.66 0.941831
Target:  5'- gGCGcGAgGGagcGggGGGCcggGCUCGCGCCg -3'
miRNA:   3'- aCGU-CUgCCa--CuuCUCG---UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 30218 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 30368 0.71 0.737084
Target:  5'- cGCGcGGCGGgggagggGAGGGGCgggGCCgGCGCCc -3'
miRNA:   3'- aCGU-CUGCCa------CUUCUCG---UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 30499 0.71 0.70621
Target:  5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3'
miRNA:   3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 31418 0.66 0.921379
Target:  5'- cGCGGcCGG-GgcGGGC-CCgCGCGCCc -3'
miRNA:   3'- aCGUCuGCCaCuuCUCGuGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 31593 0.66 0.932598
Target:  5'- cGCgaGGACGGgccgcgcgccgcgcAGGGGCGCCUccaGCGCCg -3'
miRNA:   3'- aCG--UCUGCCac------------UUCUCGUGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 31747 0.69 0.829227
Target:  5'- cGCgGGGCGGgGgcGcGGCGCCCGCcCCa -3'
miRNA:   3'- aCG-UCUGCCaCuuC-UCGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 32232 0.65 0.946343
Target:  5'- cGCGGGCGGUccgcGGGCGgUC-CGCCg -3'
miRNA:   3'- aCGUCUGCCAcuu-CUCGUgGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 32825 0.69 0.824126
Target:  5'- cGCGGACGaGUGGgggcggGGGGCGgCCCccagggcggccagcgGCACCc -3'
miRNA:   3'- aCGUCUGC-CACU------UCUCGU-GGG---------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 33243 0.66 0.926855
Target:  5'- cGCggaGGACGG-GggGcGCGuCCC-CGCCg -3'
miRNA:   3'- aCG---UCUGCCaCuuCuCGU-GGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 33757 0.67 0.909705
Target:  5'- gGCGcGACGccGAGGAcgccgugcGCGCCgGCACCg -3'
miRNA:   3'- aCGU-CUGCcaCUUCU--------CGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 33865 0.72 0.656273
Target:  5'- cGCGuGGCGGUGGAGGGCAacaGCAgCCa -3'
miRNA:   3'- aCGU-CUGCCACUUCUCGUgggUGU-GG- -5'
21384 5' -55 NC_004812.1 + 34124 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 34227 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 34689 0.67 0.897075
Target:  5'- cUGCgAGGCGugcGUGAGccaggcgacGAGCGCCUcguACACCg -3'
miRNA:   3'- -ACG-UCUGC---CACUU---------CUCGUGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 35089 0.68 0.84575
Target:  5'- cGUGGACGcc-GAGGGCGCCCccgcgGCGCCc -3'
miRNA:   3'- aCGUCUGCcacUUCUCGUGGG-----UGUGG- -5'
21384 5' -55 NC_004812.1 + 35281 0.73 0.615109
Target:  5'- gGUAGGCcacgagccgGGUGGGcAGCACCCGCGCg -3'
miRNA:   3'- aCGUCUG---------CCACUUcUCGUGGGUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.