miRNA display CGI


Results 101 - 120 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 35533 0.68 0.87639
Target:  5'- --gGGGCGGgggGgcGGGaCGCCCGCGCg -3'
miRNA:   3'- acgUCUGCCa--CuuCUC-GUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 35577 0.69 0.820689
Target:  5'- aGgGGGCGGcGggG-GCACCCGacggcgacCGCCg -3'
miRNA:   3'- aCgUCUGCCaCuuCuCGUGGGU--------GUGG- -5'
21384 5' -55 NC_004812.1 + 35584 0.66 0.921379
Target:  5'- cGCcGGCGccgaGggGAGCGCCCccggccCGCCg -3'
miRNA:   3'- aCGuCUGCca--CuuCUCGUGGGu-----GUGG- -5'
21384 5' -55 NC_004812.1 + 35750 0.73 0.6254
Target:  5'- cUGCGGGgcCGGgGAGGGGCcgcgGCCCGCGCg -3'
miRNA:   3'- -ACGUCU--GCCaCUUCUCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 35872 0.67 0.897075
Target:  5'- cGCAGGCGGgGggGuaGGCcuccuggaagaGCCCGCAg- -3'
miRNA:   3'- aCGUCUGCCaCuuC--UCG-----------UGGGUGUgg -5'
21384 5' -55 NC_004812.1 + 36339 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 36448 0.68 0.860721
Target:  5'- cGCGGcCGcGUugucGAGGAGCGggggggcCCCGCGCCc -3'
miRNA:   3'- aCGUCuGC-CA----CUUCUCGU-------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 36456 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 36618 0.69 0.829227
Target:  5'- gGCGGgggucugccGCGGgaGGAGGGCGCCgGgCGCCg -3'
miRNA:   3'- aCGUC---------UGCCa-CUUCUCGUGGgU-GUGG- -5'
21384 5' -55 NC_004812.1 + 36915 0.66 0.921379
Target:  5'- gGgGGACGGUGccGccAGCuCCCGCAgCCc -3'
miRNA:   3'- aCgUCUGCCACuuC--UCGuGGGUGU-GG- -5'
21384 5' -55 NC_004812.1 + 37110 0.71 0.697121
Target:  5'- cGUcgAGGCGGUGuu-GGCGCCCGCgucgGCCg -3'
miRNA:   3'- aCG--UCUGCCACuucUCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 37359 0.68 0.84575
Target:  5'- cUGCAGcguggcguacacGCGGUcGAAGcGCACCCcCGCg -3'
miRNA:   3'- -ACGUC------------UGCCA-CUUCuCGUGGGuGUGg -5'
21384 5' -55 NC_004812.1 + 37789 0.67 0.897075
Target:  5'- gGUAGACguguuguguguGGUGGucucGGGGCGCgCUGCGCCc -3'
miRNA:   3'- aCGUCUG-----------CCACU----UCUCGUG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 38583 0.68 0.861489
Target:  5'- aGCGGG-GGUGGGcGGGCGCgggggUCGCGCCg -3'
miRNA:   3'- aCGUCUgCCACUU-CUCGUG-----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 38890 0.68 0.869047
Target:  5'- cGCGGGCgccGGUcaGggGGGCGcuCCCGCgACCc -3'
miRNA:   3'- aCGUCUG---CCA--CuuCUCGU--GGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 39029 0.68 0.84575
Target:  5'- aUGgGGGCGGUGGugacGAGCACgCCGucgacgggcCGCCc -3'
miRNA:   3'- -ACgUCUGCCACUu---CUCGUG-GGU---------GUGG- -5'
21384 5' -55 NC_004812.1 + 39595 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 39846 0.7 0.756549
Target:  5'- cGUAGGCGGUGcgGGGGGCcggggGCUC-CGCCa -3'
miRNA:   3'- aCGUCUGCCAC--UUCUCG-----UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 40211 0.69 0.820689
Target:  5'- cGCAG-CGGaucGgcGAcCGCCCGCGCCu -3'
miRNA:   3'- aCGUCuGCCa--CuuCUcGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 40983 0.66 0.932088
Target:  5'- cUGCGGcCGGUcuguguccGAGGA-CGCCC-CACCc -3'
miRNA:   3'- -ACGUCuGCCA--------CUUCUcGUGGGuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.