miRNA display CGI


Results 41 - 60 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 145815 0.76 0.438365
Target:  5'- gUGUGGGCGGcGggGucGGCgGCCCACGCCc -3'
miRNA:   3'- -ACGUCUGCCaCuuC--UCG-UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 145774 0.67 0.909705
Target:  5'- cGCGGGgGGgugccgGAAGcAGCGCgaGCGCCu -3'
miRNA:   3'- aCGUCUgCCa-----CUUC-UCGUGggUGUGG- -5'
21384 5' -55 NC_004812.1 + 145651 0.67 0.897075
Target:  5'- uUGCGGAUGGUGuccguGAGC--UgGCGCCg -3'
miRNA:   3'- -ACGUCUGCCACuu---CUCGugGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 145216 0.69 0.829227
Target:  5'- cGCGGuaccggaacGCGGUGGuGGAGCGaucCCCGCcCCg -3'
miRNA:   3'- aCGUC---------UGCCACU-UCUCGU---GGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 144852 0.65 0.946343
Target:  5'- cGCGGGgagaGcGUGcGGAGC-CCCACgGCCg -3'
miRNA:   3'- aCGUCUg---C-CACuUCUCGuGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 144419 0.66 0.932088
Target:  5'- gGCGcGACGGcGGcucGGaAGUuCCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCaCU---UC-UCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 144076 0.65 0.946343
Target:  5'- gGCcuGGCGGagcugcugGAGGAGUcCCCGCuGCCg -3'
miRNA:   3'- aCGu-CUGCCa-------CUUCUCGuGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 142272 0.82 0.194743
Target:  5'- gUGCAGGCgcaGGUGggGcAGCACCCcuACACCc -3'
miRNA:   3'- -ACGUCUG---CCACuuC-UCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 141859 0.71 0.737084
Target:  5'- gGCGuGACGGUGGAcGGCAUCgGCAUg -3'
miRNA:   3'- aCGU-CUGCCACUUcUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 141722 0.76 0.420446
Target:  5'- cGUAGucGgGGUGggGuGCACCUGCACCc -3'
miRNA:   3'- aCGUC--UgCCACuuCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 141214 0.66 0.923599
Target:  5'- gGCGGGCGGgGGcgaguacgugccgguGGAGCGguCCCugACUc -3'
miRNA:   3'- aCGUCUGCCaCU---------------UCUCGU--GGGugUGG- -5'
21384 5' -55 NC_004812.1 + 140883 0.66 0.926855
Target:  5'- gGgGGugGGUGGcgggacgcgcgGGGGCAUCUGC-CCg -3'
miRNA:   3'- aCgUCugCCACU-----------UCUCGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 139615 0.69 0.811098
Target:  5'- gUGCAGcCGGUGGuccGGAGUgacguugACCCGgACUa -3'
miRNA:   3'- -ACGUCuGCCACU---UCUCG-------UGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 139307 0.67 0.897075
Target:  5'- gUGCGG-CGGccGAGGGCGgcgagCCACGCCg -3'
miRNA:   3'- -ACGUCuGCCacUUCUCGUg----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 139140 0.7 0.775569
Target:  5'- cGCGGcauccgccGCGGUcGAGAGCGCCaccccCACCg -3'
miRNA:   3'- aCGUC--------UGCCAcUUCUCGUGGgu---GUGG- -5'
21384 5' -55 NC_004812.1 + 138943 0.68 0.851351
Target:  5'- gGCGGGCGGgaccgagagGgcGAGCcgccggcgaccgaaGCCCcgGCACCg -3'
miRNA:   3'- aCGUCUGCCa--------CuuCUCG--------------UGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 138638 0.7 0.784888
Target:  5'- aUGgAGGCGGUGuuucgcGGAGCGCUgACggGCCu -3'
miRNA:   3'- -ACgUCUGCCACu-----UCUCGUGGgUG--UGG- -5'
21384 5' -55 NC_004812.1 + 138418 0.69 0.820689
Target:  5'- cGUGGACGc-GggGGGCugCCgGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCuuCUCGugGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 138371 0.72 0.64599
Target:  5'- cGCgGGACGGgcGGGGGCGCgUACGCCg -3'
miRNA:   3'- aCG-UCUGCCacUUCUCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 138290 0.72 0.650105
Target:  5'- cUGCGGGCGGUGGucgcggcgggcucggAGgguGGCGCCgGCGCg -3'
miRNA:   3'- -ACGUCUGCCACU---------------UC---UCGUGGgUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.