miRNA display CGI


Results 61 - 80 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 138043 0.75 0.504293
Target:  5'- gGCGGcgGCGGcgGcGGAGCggGCCCGCGCCg -3'
miRNA:   3'- aCGUC--UGCCa-CuUCUCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 137800 0.73 0.615109
Target:  5'- gGCGGGCGGcGAgggcgccgcGGAGCAggccCCCugGCCc -3'
miRNA:   3'- aCGUCUGCCaCU---------UCUCGU----GGGugUGG- -5'
21384 5' -55 NC_004812.1 + 136500 0.75 0.494597
Target:  5'- cGUcuGGGCGGaGGAGAGCAUCUGCGCUa -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 136402 0.67 0.909705
Target:  5'- uUGCGGGCGccacGUgcguccucucGAAGAcGCGCCCGCucGCCc -3'
miRNA:   3'- -ACGUCUGC----CA----------CUUCU-CGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 136296 0.67 0.915662
Target:  5'- gUGgGGGCGGUGccu-GCGCgCGCGCUg -3'
miRNA:   3'- -ACgUCUGCCACuucuCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 136099 1.12 0.002322
Target:  5'- gUGCAGACGGUGAAGAGCACCCACACCu -3'
miRNA:   3'- -ACGUCUGCCACUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 135997 0.71 0.707217
Target:  5'- cGCGuGACGGacgcccUGAGcGGGCGCCC-CGCCc -3'
miRNA:   3'- aCGU-CUGCC------ACUU-CUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 135813 0.68 0.869047
Target:  5'- gUGCGG-CGGccUGgcGcAGCGCCUGCGCUg -3'
miRNA:   3'- -ACGUCuGCC--ACuuC-UCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 135794 0.77 0.385974
Target:  5'- cGCGGAUGGUGAcgaggcGGGCGCCgACGCg -3'
miRNA:   3'- aCGUCUGCCACUu-----CUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 133437 0.69 0.819826
Target:  5'- gUGCAGcacguacACGGUGugcgccAGGGCGCUgACGCUg -3'
miRNA:   3'- -ACGUC-------UGCCACu-----UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 133254 0.69 0.803102
Target:  5'- gGCcgGGGCGGUGcacagGAGGGCGCCgaagaGCAUCg -3'
miRNA:   3'- aCG--UCUGCCAC-----UUCUCGUGGg----UGUGG- -5'
21384 5' -55 NC_004812.1 + 133088 0.7 0.783962
Target:  5'- cGCcGAC-GUGggGccccagcAGCACCCGCACg -3'
miRNA:   3'- aCGuCUGcCACuuC-------UCGUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 133061 0.69 0.811979
Target:  5'- cGgGGGCGGgcgcGggGGGCggucccGCCCcCACCg -3'
miRNA:   3'- aCgUCUGCCa---CuuCUCG------UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 133003 0.69 0.803102
Target:  5'- cGCGGACGacc-GGGGCGCCCAaccccCGCCc -3'
miRNA:   3'- aCGUCUGCcacuUCUCGUGGGU-----GUGG- -5'
21384 5' -55 NC_004812.1 + 132983 0.66 0.93708
Target:  5'- cGCGGACGcccgucuGGGCGCCCGgcCACUg -3'
miRNA:   3'- aCGUCUGCcacuu--CUCGUGGGU--GUGG- -5'
21384 5' -55 NC_004812.1 + 131248 0.68 0.853721
Target:  5'- cGCGGACGccGgcGAGCccguggucgccGCCCAcCGCCg -3'
miRNA:   3'- aCGUCUGCcaCuuCUCG-----------UGGGU-GUGG- -5'
21384 5' -55 NC_004812.1 + 131016 0.67 0.909705
Target:  5'- gGCGGccGCGGgGAAG-GCGuCCC-CGCCg -3'
miRNA:   3'- aCGUC--UGCCaCUUCuCGU-GGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 130929 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 130867 0.68 0.869047
Target:  5'- gGCGcGGCGGcGucGAugACCCACACCg -3'
miRNA:   3'- aCGU-CUGCCaCuuCUcgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 130314 0.69 0.829227
Target:  5'- aGCGGGCGuaGAAG-GCGCCCGagGCCu -3'
miRNA:   3'- aCGUCUGCcaCUUCuCGUGGGUg-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.