miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 130091 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 129957 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 129818 0.68 0.869047
Target:  5'- cGCAGGCuGGUGAuGAGgaaGCCCuuCugCg -3'
miRNA:   3'- aCGUCUG-CCACUuCUCg--UGGGu-GugG- -5'
21384 5' -55 NC_004812.1 + 129354 0.65 0.946343
Target:  5'- cGCAGGCGcau--GAGCACCaGCGCg -3'
miRNA:   3'- aCGUCUGCcacuuCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 129101 0.68 0.869047
Target:  5'- gGCGGGCGGgcgcgccggcGAGGAGCuCUUGCGCUu -3'
miRNA:   3'- aCGUCUGCCa---------CUUCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 128903 0.69 0.811979
Target:  5'- gGCGG-CGGcGGAGGGCGCCgGCGu- -3'
miRNA:   3'- aCGUCuGCCaCUUCUCGUGGgUGUgg -5'
21384 5' -55 NC_004812.1 + 128644 0.67 0.915662
Target:  5'- gGCAG-CGGcGcguAGAGCACCaGCACg -3'
miRNA:   3'- aCGUCuGCCaCu--UCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 128604 0.68 0.84575
Target:  5'- gGCGGGCGGggcgGggGAGgCGCC---GCCg -3'
miRNA:   3'- aCGUCUGCCa---CuuCUC-GUGGgugUGG- -5'
21384 5' -55 NC_004812.1 + 127946 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 127514 0.74 0.574148
Target:  5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3'
miRNA:   3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 126994 0.79 0.301255
Target:  5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 125837 0.69 0.837583
Target:  5'- cGCAGGCGG-GGccGGCucGCCCGCgGCCc -3'
miRNA:   3'- aCGUCUGCCaCUucUCG--UGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 125364 0.67 0.915662
Target:  5'- aGU-GAgGGUGgcGAGCGCguggaCGCACCu -3'
miRNA:   3'- aCGuCUgCCACuuCUCGUGg----GUGUGG- -5'
21384 5' -55 NC_004812.1 + 125279 0.71 0.71725
Target:  5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3'
miRNA:   3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5'
21384 5' -55 NC_004812.1 + 125165 0.67 0.890408
Target:  5'- cGCcgGGGCGGgaggcgGGAGGGCccgggcgcgcggGCCCGCcCCg -3'
miRNA:   3'- aCG--UCUGCCa-----CUUCUCG------------UGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 125081 0.67 0.915662
Target:  5'- gUGCAGACcgcgugccuccgGGcgcUGggGAGCGCCauccgaGCCg -3'
miRNA:   3'- -ACGUCUG------------CC---ACuuCUCGUGGgug---UGG- -5'
21384 5' -55 NC_004812.1 + 124954 0.7 0.782107
Target:  5'- -uCAGACGGgGAAGAGggucgcgccgccccCACCCcCGCCg -3'
miRNA:   3'- acGUCUGCCaCUUCUC--------------GUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 124480 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 124441 0.66 0.932088
Target:  5'- gGCAccCGGUccgcgcGGGGGCGCCC-CGCCg -3'
miRNA:   3'- aCGUcuGCCAc-----UUCUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 124292 0.67 0.897075
Target:  5'- aGCGGcCGGUGAcGA-CGCCCcCAUCu -3'
miRNA:   3'- aCGUCuGCCACUuCUcGUGGGuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.