miRNA display CGI


Results 61 - 80 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 18659 0.73 0.60483
Target:  5'- cGCAGACGGccaUGuccacGGCGCCCGcCGCCu -3'
miRNA:   3'- aCGUCUGCC---ACuuc--UCGUGGGU-GUGG- -5'
21384 5' -55 NC_004812.1 + 127946 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 73927 0.72 0.656273
Target:  5'- gGCuGGCGGUGgcGcacgaAGCGCCCGaagaGCCg -3'
miRNA:   3'- aCGuCUGCCACuuC-----UCGUGGGUg---UGG- -5'
21384 5' -55 NC_004812.1 + 109179 0.72 0.666536
Target:  5'- gGgAGGCGGUGGAGAGguUCUucaGCCa -3'
miRNA:   3'- aCgUCUGCCACUUCUCguGGGug-UGG- -5'
21384 5' -55 NC_004812.1 + 5555 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3223 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 15722 0.72 0.676771
Target:  5'- cGCAagaacGACGGcgaucGAGGGGCcgcgggggccGCCCGCGCCg -3'
miRNA:   3'- aCGU-----CUGCCa----CUUCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 75699 0.72 0.676771
Target:  5'- aGCAGcccccCGGUGAugcGcAGCAgCCGCGCCa -3'
miRNA:   3'- aCGUCu----GCCACUu--C-UCGUgGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 154163 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 51194 0.72 0.685951
Target:  5'- cGCGGGCGccGGGccccgccGAGCGCCgGCACCg -3'
miRNA:   3'- aCGUCUGCcaCUU-------CUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 33865 0.72 0.656273
Target:  5'- cGCGuGGCGGUGGAGGGCAacaGCAgCCa -3'
miRNA:   3'- aCGU-CUGCCACUUCUCGUgggUGU-GG- -5'
21384 5' -55 NC_004812.1 + 73792 0.72 0.64599
Target:  5'- cGCGaGCGG-GgcGGGCGCCgGCGCCc -3'
miRNA:   3'- aCGUcUGCCaCuuCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 35281 0.73 0.615109
Target:  5'- gGUAGGCcacgagccgGGUGGGcAGCACCCGCGCg -3'
miRNA:   3'- aCGUCUG---------CCACUUcUCGUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 4849 0.73 0.6254
Target:  5'- cUGCGGGgcCGGgGAGGGGCcgcgGCCCGCGCg -3'
miRNA:   3'- -ACGUCU--GCCaCUUCUCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 90684 0.73 0.6254
Target:  5'- gGUAGAUGGgGAGGcgcuugagcAGCACCCACggGCCc -3'
miRNA:   3'- aCGUCUGCCaCUUC---------UCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 106461 0.73 0.6254
Target:  5'- gGCGGACGGaGccGGGCGCCCcccACGCg -3'
miRNA:   3'- aCGUCUGCCaCuuCUCGUGGG---UGUGg -5'
21384 5' -55 NC_004812.1 + 124269 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5438 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 49481 0.72 0.64599
Target:  5'- cGCcuGACGGcgcUGGAGcucgucaaccGCACCCGCACCa -3'
miRNA:   3'- aCGu-CUGCC---ACUUCu---------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 138371 0.72 0.64599
Target:  5'- cGCgGGACGGgcGGGGGCGCgUACGCCg -3'
miRNA:   3'- aCG-UCUGCCacUUCUCGUGgGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.