Results 81 - 100 of 457 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21384 | 5' | -55 | NC_004812.1 | + | 156007 | 0.71 | 0.70621 |
Target: 5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3' miRNA: 3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 129957 | 0.71 | 0.707217 |
Target: 5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3' miRNA: 3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 125279 | 0.71 | 0.71725 |
Target: 5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3' miRNA: 3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 155726 | 0.71 | 0.727209 |
Target: 5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3' miRNA: 3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 81108 | 0.71 | 0.727209 |
Target: 5'- gUGCGGGCGGcgUGguGGGCcguggccaGCCgGCGCCa -3' miRNA: 3'- -ACGUCUGCC--ACuuCUCG--------UGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 67790 | 0.71 | 0.727209 |
Target: 5'- cGCGGGCGGcuucggGggGGGCggGCCCGgcaGCCc -3' miRNA: 3'- aCGUCUGCCa-----CuuCUCG--UGGGUg--UGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 120880 | 0.71 | 0.731169 |
Target: 5'- cGCAGGgGGcUGGgucgGGGccgcgugccgaccccGCGCCCGCACCa -3' miRNA: 3'- aCGUCUgCC-ACU----UCU---------------CGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 51194 | 0.72 | 0.685951 |
Target: 5'- cGCGGGCGccGGGccccgccGAGCGCCgGCACCg -3' miRNA: 3'- aCGUCUGCcaCUU-------CUCGUGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 154163 | 0.72 | 0.676771 |
Target: 5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3' miRNA: 3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 75699 | 0.72 | 0.676771 |
Target: 5'- aGCAGcccccCGGUGAugcGcAGCAgCCGCGCCa -3' miRNA: 3'- aCGUCu----GCCACUu--C-UCGUgGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 49481 | 0.72 | 0.64599 |
Target: 5'- cGCcuGACGGcgcUGGAGcucgucaaccGCACCCGCACCa -3' miRNA: 3'- aCGu-CUGCC---ACUUCu---------CGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 138371 | 0.72 | 0.64599 |
Target: 5'- cGCgGGACGGgcGGGGGCGCgUACGCCg -3' miRNA: 3'- aCG-UCUGCCacUUCUCGUGgGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 73792 | 0.72 | 0.64599 |
Target: 5'- cGCGaGCGG-GgcGGGCGCCgGCGCCc -3' miRNA: 3'- aCGUcUGCCaCuuCUCGUGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 33865 | 0.72 | 0.656273 |
Target: 5'- cGCGuGGCGGUGGAGGGCAacaGCAgCCa -3' miRNA: 3'- aCGU-CUGCCACUUCUCGUgggUGU-GG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 73927 | 0.72 | 0.656273 |
Target: 5'- gGCuGGCGGUGgcGcacgaAGCGCCCGaagaGCCg -3' miRNA: 3'- aCGuCUGCCACuuC-----UCGUGGGUg---UGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 109179 | 0.72 | 0.666536 |
Target: 5'- gGgAGGCGGUGGAGAGguUCUucaGCCa -3' miRNA: 3'- aCgUCUGCCACUUCUCguGGGug-UGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 5555 | 0.72 | 0.666536 |
Target: 5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3' miRNA: 3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 3223 | 0.72 | 0.673704 |
Target: 5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3' miRNA: 3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 15722 | 0.72 | 0.676771 |
Target: 5'- cGCAagaacGACGGcgaucGAGGGGCcgcgggggccGCCCGCGCCg -3' miRNA: 3'- aCGU-----CUGCCa----CUUCUCG----------UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 141859 | 0.71 | 0.737084 |
Target: 5'- gGCGuGACGGUGGAcGGCAUCgGCAUg -3' miRNA: 3'- aCGU-CUGCCACUUcUCGUGGgUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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