miRNA display CGI


Results 101 - 120 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 100147 0.71 0.737084
Target:  5'- cGCGGGCGGcgGGgcGGGGCucaUCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU--UCUCGug-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 108750 0.7 0.743943
Target:  5'- cUGCAGGCGcUGcggcuggggggcgcGGGGGCGCCUACgACCu -3'
miRNA:   3'- -ACGUCUGCcAC--------------UUCUCGUGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 88968 0.7 0.745893
Target:  5'- aGCAGugguCGGUGGAGcaGGCGCugccgugCCugGCCg -3'
miRNA:   3'- aCGUCu---GCCACUUC--UCGUG-------GGugUGG- -5'
21384 5' -55 NC_004812.1 + 149082 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 39846 0.7 0.756549
Target:  5'- cGUAGGCGGUGcgGGGGGCcggggGCUC-CGCCa -3'
miRNA:   3'- aCGUCUGCCAC--UUCUCG-----UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 155726 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 125279 0.71 0.71725
Target:  5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3'
miRNA:   3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5'
21384 5' -55 NC_004812.1 + 73927 0.72 0.656273
Target:  5'- gGCuGGCGGUGgcGcacgaAGCGCCCGaagaGCCg -3'
miRNA:   3'- aCGuCUGCCACuuC-----UCGUGGGUg---UGG- -5'
21384 5' -55 NC_004812.1 + 109179 0.72 0.666536
Target:  5'- gGgAGGCGGUGGAGAGguUCUucaGCCa -3'
miRNA:   3'- aCgUCUGCCACUUCUCguGGGug-UGG- -5'
21384 5' -55 NC_004812.1 + 5555 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3223 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 15722 0.72 0.676771
Target:  5'- cGCAagaacGACGGcgaucGAGGGGCcgcgggggccGCCCGCGCCg -3'
miRNA:   3'- aCGU-----CUGCCa----CUUCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 75699 0.72 0.676771
Target:  5'- aGCAGcccccCGGUGAugcGcAGCAgCCGCGCCa -3'
miRNA:   3'- aCGUCu----GCCACUu--C-UCGUgGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 154163 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 51194 0.72 0.685951
Target:  5'- cGCGGGCGccGGGccccgccGAGCGCCgGCACCg -3'
miRNA:   3'- aCGUCUGCcaCUU-------CUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 23480 0.72 0.686969
Target:  5'- cUGCuGGCGGUGGucgaGGGGCugCUgucGCACUa -3'
miRNA:   3'- -ACGuCUGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 37110 0.71 0.697121
Target:  5'- cGUcgAGGCGGUGuu-GGCGCCCGCgucgGCCg -3'
miRNA:   3'- aCG--UCUGCCACuucUCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 147116 0.71 0.697121
Target:  5'- gGCAGugGGUGGAGuacagGCCUGCGCa -3'
miRNA:   3'- aCGUCugCCACUUCucg--UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 156007 0.71 0.70621
Target:  5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3'
miRNA:   3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 129957 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.