miRNA display CGI


Results 41 - 60 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 109143 0.73 0.615109
Target:  5'- aGCAGGCgGGUGAcgcGGcuCACCCGCAgCg -3'
miRNA:   3'- aCGUCUG-CCACU---UCucGUGGGUGUgG- -5'
21384 5' -55 NC_004812.1 + 136500 0.75 0.494597
Target:  5'- cGUcuGGGCGGaGGAGAGCAUCUGCGCUa -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 142272 0.82 0.194743
Target:  5'- gUGCAGGCgcaGGUGggGcAGCACCCcuACACCc -3'
miRNA:   3'- -ACGUCUG---CCACuuC-UCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 15997 0.73 0.615109
Target:  5'- aGCAc-CGGUGcagGAGGGCGCCgGCGCCc -3'
miRNA:   3'- aCGUcuGCCAC---UUCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 61313 0.84 0.150627
Target:  5'- cGCGGucguucaacGCGGUGGAGAGCcaccgcgGCCCACACCc -3'
miRNA:   3'- aCGUC---------UGCCACUUCUCG-------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 18713 0.71 0.716249
Target:  5'- cGCAGuagcuccGCGGcgcuGGGGCGCCgCGCGCCa -3'
miRNA:   3'- aCGUC-------UGCCacu-UCUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 154727 0.79 0.301255
Target:  5'- cGCGGGCGGggcccGGGCGCCCGgGCCa -3'
miRNA:   3'- aCGUCUGCCacuu-CUCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 4449 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 28655 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 82149 0.72 0.666536
Target:  5'- cGUGGGCGGUGGacgaguuccGGGGCGCgCGgGCCc -3'
miRNA:   3'- aCGUCUGCCACU---------UCUCGUGgGUgUGG- -5'
21384 5' -55 NC_004812.1 + 138290 0.72 0.650105
Target:  5'- cUGCGGGCGGUGGucgcggcgggcucggAGgguGGCGCCgGCGCg -3'
miRNA:   3'- -ACGUCUGCCACU---------------UC---UCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 106781 0.72 0.635697
Target:  5'- cGuCGGGCGGggcgcgcgGGAGGGgGCCuCGCGCCg -3'
miRNA:   3'- aC-GUCUGCCa-------CUUCUCgUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 137800 0.73 0.615109
Target:  5'- gGCGGGCGGcGAgggcgccgcGGAGCAggccCCCugGCCc -3'
miRNA:   3'- aCGUCUGCCaCU---------UCUCGU----GGGugUGG- -5'
21384 5' -55 NC_004812.1 + 15013 0.73 0.60483
Target:  5'- uUGCGGACGG-GGcaGGCGCCCAgggGCCg -3'
miRNA:   3'- -ACGUCUGCCaCUucUCGUGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 88791 0.73 0.584343
Target:  5'- cUGCuuucGGACGGacGggGGGCugCCGgGCCg -3'
miRNA:   3'- -ACG----UCUGCCa-CuuCUCGugGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 99465 0.74 0.543838
Target:  5'- cGCgAGACGGgcgccuGCGCCCGCGCCc -3'
miRNA:   3'- aCG-UCUGCCacuucuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155381 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 79332 0.75 0.475468
Target:  5'- aGCGGACGGUGcggcGGAGCucgGgCCugGCCg -3'
miRNA:   3'- aCGUCUGCCACu---UCUCG---UgGGugUGG- -5'
21384 5' -55 NC_004812.1 + 4583 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 153644 0.77 0.385974
Target:  5'- aUGCGGGCGGgcggGGAGAGgGCgCGCACg -3'
miRNA:   3'- -ACGUCUGCCa---CUUCUCgUGgGUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.