miRNA display CGI


Results 61 - 80 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 137800 0.73 0.615109
Target:  5'- gGCGGGCGGcGAgggcgccgcGGAGCAggccCCCugGCCc -3'
miRNA:   3'- aCGUCUGCCaCU---------UCUCGU----GGGugUGG- -5'
21384 5' -55 NC_004812.1 + 36339 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 55693 0.78 0.337886
Target:  5'- cGguGGCGGUGGGcGcGCGCCUGCACCc -3'
miRNA:   3'- aCguCUGCCACUU-CuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 141722 0.76 0.420446
Target:  5'- cGUAGucGgGGUGggGuGCACCUGCACCc -3'
miRNA:   3'- aCGUC--UgCCACuuCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23531 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 39595 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 77133 0.74 0.532852
Target:  5'- gGCGGuCGGUGAGGAgGCcgggcggGCCCcCGCCg -3'
miRNA:   3'- aCGUCuGCCACUUCU-CG-------UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 5421 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 110896 0.73 0.584343
Target:  5'- gGCAGGCcGUcccGAuGAGCGCCCgGCGCCg -3'
miRNA:   3'- aCGUCUGcCA---CUuCUCGUGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 51702 0.73 0.60483
Target:  5'- cGCGuGCcagGAAGAGCGCCUGCGCCa -3'
miRNA:   3'- aCGUcUGccaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 29033 0.7 0.784888
Target:  5'- gGUAGACGc-GggGGGCGcgcccccuccCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCuuCUCGU----------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 114312 0.7 0.775569
Target:  5'- gGCGGcgcccaggaACGGacgcGGGGCGCCCGCGCUa -3'
miRNA:   3'- aCGUC---------UGCCacu-UCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 69459 0.72 0.656273
Target:  5'- -aCAGGCGGUc-GGAGCGCC-GCACCa -3'
miRNA:   3'- acGUCUGCCAcuUCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 34124 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 4449 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 18713 0.71 0.716249
Target:  5'- cGCAGuagcuccGCGGcgcuGGGGCGCCgCGCGCCa -3'
miRNA:   3'- aCGUC-------UGCCacu-UCUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 30218 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 108054 0.71 0.737084
Target:  5'- cUGCGGGCGGUGAGGGGgAagUCgGCGgCg -3'
miRNA:   3'- -ACGUCUGCCACUUCUCgU--GGgUGUgG- -5'
21384 5' -55 NC_004812.1 + 23574 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 27461 0.7 0.766119
Target:  5'- cGCAGACGc-GGGcGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCUUcUCGUGG-GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.