miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 36456 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 56439 0.71 0.704194
Target:  5'- gGCGGGCGGcGGGccuggcggcgcgauGAGCcccgccccgccGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUU--------------CUCG-----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 105416 0.71 0.707217
Target:  5'- cGCucGGCGGggcccGGCGCCCGCGCCc -3'
miRNA:   3'- aCGu-CUGCCacuucUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 106080 0.71 0.720246
Target:  5'- aGCAucauguuguuuacGGCGGUGGAGAGCagcgcgcgggugagcGCCUcgGCGCCc -3'
miRNA:   3'- aCGU-------------CUGCCACUUCUCG---------------UGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 151781 0.71 0.731169
Target:  5'- cGCAGGgGGcUGGgucgGGGccgcgugccgaccccGCGCCCGCACCa -3'
miRNA:   3'- aCGUCUgCC-ACU----UCU---------------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23574 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 27461 0.7 0.766119
Target:  5'- cGCAGACGc-GGGcGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCUUcUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 51702 0.73 0.60483
Target:  5'- cGCGuGCcagGAAGAGCGCCUGCGCCa -3'
miRNA:   3'- aCGUcUGccaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 110896 0.73 0.584343
Target:  5'- gGCAGGCcGUcccGAuGAGCGCCCgGCGCCg -3'
miRNA:   3'- aCGUCUGcCA---CUuCUCGUGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 5421 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 71074 0.7 0.794069
Target:  5'- cGUGGAUGGUGuuGgugguccgcaGGCGCCCaaACACCc -3'
miRNA:   3'- aCGUCUGCCACuuC----------UCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 139615 0.69 0.811098
Target:  5'- gUGCAGcCGGUGGuccGGAGUgacguugACCCGgACUa -3'
miRNA:   3'- -ACGUCuGCCACU---UCUCG-------UGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 44152 0.69 0.811979
Target:  5'- cGcCGGACGGccGGAGGGCGCUCGgggGCCg -3'
miRNA:   3'- aC-GUCUGCCa-CUUCUCGUGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 65168 0.69 0.820689
Target:  5'- cUGCGGGCGcUGggGuaCGCCUACAUCa -3'
miRNA:   3'- -ACGUCUGCcACuuCucGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 94358 0.69 0.829227
Target:  5'- gGCGGGCGGcGuuGGAGCGCCgCcCugCg -3'
miRNA:   3'- aCGUCUGCCaCu-UCUCGUGG-GuGugG- -5'
21384 5' -55 NC_004812.1 + 55693 0.78 0.337886
Target:  5'- cGguGGCGGUGGGcGcGCGCCUGCACCc -3'
miRNA:   3'- aCguCUGCCACUU-CuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 141722 0.76 0.420446
Target:  5'- cGUAGucGgGGUGggGuGCACCUGCACCc -3'
miRNA:   3'- aCGUC--UgCCACuuCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23531 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 39595 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 77133 0.74 0.532852
Target:  5'- gGCGGuCGGUGAGGAgGCcgggcggGCCCcCGCCg -3'
miRNA:   3'- aCGUCuGCCACUUCU-CG-------UGGGuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.