miRNA display CGI


Results 21 - 40 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 83105 0.66 0.567324
Target:  5'- gCCUCCuguucggcacGCGCCUggcggacuGGCGCCacggcaagcugucgUCCUCCGa- -3'
miRNA:   3'- -GGAGG----------CGCGGG--------UCGCGG--------------AGGAGGCgc -5'
21385 3' -64.7 NC_004812.1 + 124869 0.66 0.560737
Target:  5'- --gCCGCGCCCccgccccGCGCCUCUcggCCGa- -3'
miRNA:   3'- ggaGGCGCGGGu------CGCGGAGGa--GGCgc -5'
21385 3' -64.7 NC_004812.1 + 109715 0.66 0.560737
Target:  5'- gCCgCCGCGCCCgaccccggGGCGCUggggCUGCGa -3'
miRNA:   3'- -GGaGGCGCGGG--------UCGCGGaggaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 147979 0.66 0.560737
Target:  5'- gCUCCGUGCUCauGGCGCCggg-CgGCGg -3'
miRNA:   3'- gGAGGCGCGGG--UCGCGGaggaGgCGC- -5'
21385 3' -64.7 NC_004812.1 + 57860 0.66 0.560737
Target:  5'- gCCUCCugucgucgcCGCCgGGgGCCUgCCcCCGCGc -3'
miRNA:   3'- -GGAGGc--------GCGGgUCgCGGA-GGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 11568 0.66 0.560737
Target:  5'- uCCgCCGcCGCCCc-CGCCUCCgcgcucgCCGgGg -3'
miRNA:   3'- -GGaGGC-GCGGGucGCGGAGGa------GGCgC- -5'
21385 3' -64.7 NC_004812.1 + 153379 0.66 0.560737
Target:  5'- gCUCCG-GCC--GCGCCUUCggcccgCCGCGc -3'
miRNA:   3'- gGAGGCgCGGguCGCGGAGGa-----GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 85212 0.66 0.560737
Target:  5'- cCC-CCGCGCCCGcUGCgaCCcCCGCc -3'
miRNA:   3'- -GGaGGCGCGGGUcGCGgaGGaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 120910 0.66 0.560737
Target:  5'- aCC-CCGCGCCCgcaccAGC-CCUCgCcCCGCc -3'
miRNA:   3'- -GGaGGCGCGGG-----UCGcGGAG-GaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 151811 0.66 0.560737
Target:  5'- aCC-CCGCGCCCgcaccAGC-CCUCgCcCCGCc -3'
miRNA:   3'- -GGaGGCGCGGG-----UCGcGGAG-GaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 10330 0.66 0.560737
Target:  5'- gCUUCGUGgCCAGCgcgguucgccGCCUCg-CCGCGu -3'
miRNA:   3'- gGAGGCGCgGGUCG----------CGGAGgaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 27871 0.66 0.560737
Target:  5'- gCUCCG-GCC--GCGCCUUCggcccgCCGCGc -3'
miRNA:   3'- gGAGGCgCGGguCGCGGAGGa-----GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 9637 0.66 0.560737
Target:  5'- cCCU-CGC-CCCAGCGCCcacUCCcaccCCGCc -3'
miRNA:   3'- -GGAgGCGcGGGUCGCGG---AGGa---GGCGc -5'
21385 3' -64.7 NC_004812.1 + 54663 0.66 0.560737
Target:  5'- cCCUgacgcCCGcCGCCC-GCGCCgcgCgUCCGgGg -3'
miRNA:   3'- -GGA-----GGC-GCGGGuCGCGGa--GgAGGCgC- -5'
21385 3' -64.7 NC_004812.1 + 58532 0.66 0.560737
Target:  5'- gCCcCCGauaGCCCGGgGCCcggcUCCggCCGCc -3'
miRNA:   3'- -GGaGGCg--CGGGUCgCGG----AGGa-GGCGc -5'
21385 3' -64.7 NC_004812.1 + 139849 0.66 0.560737
Target:  5'- cCCUCCG-GCCCccGCGCC-CC-CCGa- -3'
miRNA:   3'- -GGAGGCgCGGGu-CGCGGaGGaGGCgc -5'
21385 3' -64.7 NC_004812.1 + 28477 0.66 0.559797
Target:  5'- gCCgCCGCGCCUgggccgcGGCGCCaacgugcgCUaCCGCGc -3'
miRNA:   3'- -GGaGGCGCGGG-------UCGCGGa-------GGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 153985 0.66 0.559797
Target:  5'- gCCgCCGCGCCUgggccgcGGCGCCaacgugCgCUaCCGCGc -3'
miRNA:   3'- -GGaGGCGCGGG-------UCGCGGa-----G-GA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 131215 0.66 0.555107
Target:  5'- gUCUCCgGCGagcgcgccgaccuccCCCuGUGUCUCuCUCCGCa -3'
miRNA:   3'- -GGAGG-CGC---------------GGGuCGCGGAG-GAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 5707 0.66 0.555107
Target:  5'- gUCUCCgGCGagcgcgccgaccuccCCCuGUGUCUCuCUCCGCa -3'
miRNA:   3'- -GGAGG-CGC---------------GGGuCGCGGAG-GAGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.