miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 54647 0.68 0.7405
Target:  5'- -uCACC-ACGgggGUCGCcGCcgcgGGGCCCAg -3'
miRNA:   3'- cuGUGGuUGCa--CAGCGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 28873 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 95663 0.68 0.75016
Target:  5'- cGAC-CCGACGUGUcggCGCUGUAcGGCagCCGc -3'
miRNA:   3'- -CUGuGGUUGCACA---GCGACGU-CCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 722 0.68 0.75016
Target:  5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3'
miRNA:   3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5'
21385 5' -57.6 NC_004812.1 + 82818 0.68 0.75016
Target:  5'- gGGCGCCGGCGcccgccCGCUcGCGGaGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCaca---GCGA-CGUC-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2771 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 96174 0.68 0.7405
Target:  5'- gGGCGgCGGCGaggugGUCGCgccggaGCGGGUCCAg -3'
miRNA:   3'- -CUGUgGUUGCa----CAGCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 19579 0.68 0.7405
Target:  5'- cGCACUGGgGUGUguccuggaucgcCGCcagGCGGGCCCAc -3'
miRNA:   3'- cUGUGGUUgCACA------------GCGa--CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 1104 0.68 0.7405
Target:  5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3'
miRNA:   3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 27678 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 85810 0.69 0.680889
Target:  5'- gGACGCCGGgccCGUGUCGUgaaGCAGaCCCu -3'
miRNA:   3'- -CUGUGGUU---GCACAGCGa--CGUCcGGGu -5'
21385 5' -57.6 NC_004812.1 + 141542 0.69 0.650424
Target:  5'- gGGCGgCGACGUGUCGCcGCcaguccgccuccAGGuCCCGg -3'
miRNA:   3'- -CUGUgGUUGCACAGCGaCG------------UCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 29643 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 3858 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 138986 0.69 0.670762
Target:  5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 111555 0.69 0.679878
Target:  5'- uGCACCAGCGg--CGCUGCAuguucggcgugguGaGCCCGg -3'
miRNA:   3'- cUGUGGUUGCacaGCGACGU-------------C-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 46809 0.69 0.680889
Target:  5'- gGGCAUCGAagauccggGUGaUCGuCUGCGGGCCCc -3'
miRNA:   3'- -CUGUGGUUg-------CAC-AGC-GACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 153186 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83763 0.69 0.688962
Target:  5'- gGACGCCAGCGcgcccaacagCGaCUGCAgcGGCCCGu -3'
miRNA:   3'- -CUGUGGUUGCaca-------GC-GACGU--CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 96357 0.69 0.690976
Target:  5'- cGGCGCCccGACGg--UGCUGCcgcGGCCCAc -3'
miRNA:   3'- -CUGUGG--UUGCacaGCGACGu--CCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.