miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 1784 0.68 0.701014
Target:  5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 130422 0.68 0.730747
Target:  5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3'
miRNA:   3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 154381 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 95663 0.68 0.75016
Target:  5'- cGAC-CCGACGUGUcggCGCUGUAcGGCagCCGc -3'
miRNA:   3'- -CUGuGGUUGCACA---GCGACGU-CCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 20302 0.68 0.75016
Target:  5'- cGCGCCGGCGcagCGCgcgcGCAGGCaCCGc -3'
miRNA:   3'- cUGUGGUUGCacaGCGa---CGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 2771 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 96174 0.68 0.7405
Target:  5'- gGGCGgCGGCGaggugGUCGCgccggaGCGGGUCCAg -3'
miRNA:   3'- -CUGUgGUUGCa----CAGCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 19579 0.68 0.7405
Target:  5'- cGCACUGGgGUGUguccuggaucgcCGCcagGCGGGCCCAc -3'
miRNA:   3'- cUGUGGUUgCACA------------GCGa--CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 1104 0.68 0.7405
Target:  5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3'
miRNA:   3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 28873 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 95563 0.68 0.75016
Target:  5'- cGACGCCGACGUGgcggucUCGCcGCucgucgucGGCCUc -3'
miRNA:   3'- -CUGUGGUUGCAC------AGCGaCGu-------CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 135812 0.68 0.701014
Target:  5'- gGGCGCCGACGcgGgcgCGCcGCAGGUgcuCCAg -3'
miRNA:   3'- -CUGUGGUUGCa-Ca--GCGaCGUCCG---GGU- -5'
21385 5' -57.6 NC_004812.1 + 139422 0.68 0.710994
Target:  5'- cGACACCGggGCG-GcCGgUGCuGGCCCu -3'
miRNA:   3'- -CUGUGGU--UGCaCaGCgACGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 31623 0.68 0.75016
Target:  5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3'
miRNA:   3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5'
21385 5' -57.6 NC_004812.1 + 33672 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 32005 0.68 0.7405
Target:  5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3'
miRNA:   3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 4914 0.68 0.730747
Target:  5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3'
miRNA:   3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 91314 0.68 0.730747
Target:  5'- gGGCACCug---GUCGCgGCGGGCCa- -3'
miRNA:   3'- -CUGUGGuugcaCAGCGaCGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 47313 0.68 0.730747
Target:  5'- cGGCGCguACGUGcgggCGCgcagGUAGGCCUc -3'
miRNA:   3'- -CUGUGguUGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 54647 0.68 0.7405
Target:  5'- -uCACC-ACGgggGUCGCcGCcgcgGGGCCCAg -3'
miRNA:   3'- cuGUGGuUGCa--CAGCGaCG----UCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.