Results 101 - 120 of 144 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 13671 | 0.67 | 0.805636 |
Target: 5'- --aGCCGACGacggCGUUaGCGGGCCCGc -3' miRNA: 3'- cugUGGUUGCaca-GCGA-CGUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 59157 | 0.67 | 0.79673 |
Target: 5'- uGGCGCCGuccgACGgg-CGCagGCAGGCCUu -3' miRNA: 3'- -CUGUGGU----UGCacaGCGa-CGUCCGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 49071 | 0.67 | 0.79673 |
Target: 5'- -cCGCCGACGUGcUCGUcGCccAGGCCa- -3' miRNA: 3'- cuGUGGUUGCAC-AGCGaCG--UCCGGgu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 4371 | 0.67 | 0.79673 |
Target: 5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3' miRNA: 3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 129879 | 0.67 | 0.79673 |
Target: 5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3' miRNA: 3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 60125 | 0.67 | 0.79673 |
Target: 5'- cGCGCCAgcgGCGUGUC-CUGCcccuccaggagGGGCCa- -3' miRNA: 3'- cUGUGGU---UGCACAGcGACG-----------UCCGGgu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 79851 | 0.67 | 0.805636 |
Target: 5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3' miRNA: 3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 97388 | 0.67 | 0.805636 |
Target: 5'- -uCGCgGGCGUGggCGC-GCGGGCCUc -3' miRNA: 3'- cuGUGgUUGCACa-GCGaCGUCCGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 129226 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3' miRNA: 3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 128949 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3' miRNA: 3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 55361 | 0.67 | 0.787677 |
Target: 5'- -cCGCCuGACGg--CGCUGC-GGCCCGu -3' miRNA: 3'- cuGUGG-UUGCacaGCGACGuCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 142914 | 0.67 | 0.787677 |
Target: 5'- -cCGCCAGCcccUC-CUGCGGGCCCGc -3' miRNA: 3'- cuGUGGUUGcacAGcGACGUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 138712 | 0.67 | 0.787677 |
Target: 5'- gGACgACC-GCGg--CGCgGCGGGCCCGc -3' miRNA: 3'- -CUG-UGGuUGCacaGCGaCGUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 146341 | 0.66 | 0.850826 |
Target: 5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3' miRNA: 3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 18543 | 0.66 | 0.847662 |
Target: 5'- cGCGCUcGCGgccagCGCggcGCGGGCCCGc -3' miRNA: 3'- cUGUGGuUGCaca--GCGa--CGUCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 32059 | 0.66 | 0.814386 |
Target: 5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3' miRNA: 3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 21412 | 0.66 | 0.822971 |
Target: 5'- cGCGCCGACGcGUCGCaGC--GCCCc -3' miRNA: 3'- cUGUGGUUGCaCAGCGaCGucCGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 79352 | 0.66 | 0.831384 |
Target: 5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3' miRNA: 3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 155274 | 0.66 | 0.822971 |
Target: 5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3' miRNA: 3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5' |
|||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 74563 | 0.66 | 0.814386 |
Target: 5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3' miRNA: 3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home