miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 70116 0.72 0.471655
Target:  5'- aGGCGCCgGGCGcGUgGCUGC-GGCCCGc -3'
miRNA:   3'- -CUGUGG-UUGCaCAgCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 72829 0.7 0.619827
Target:  5'- -cCACCGACGggccgcugcaGUCGCUGUGGGCgCGc -3'
miRNA:   3'- cuGUGGUUGCa---------CAGCGACGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 74157 0.66 0.831384
Target:  5'- cGGCGCCAACGUGuUCGCccugGCGcgcgaguacGGCUa- -3'
miRNA:   3'- -CUGUGGUUGCAC-AGCGa---CGU---------CCGGgu -5'
21385 5' -57.6 NC_004812.1 + 74563 0.66 0.814386
Target:  5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3'
miRNA:   3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 78227 0.66 0.837166
Target:  5'- cGACGCCAgaaagucgcccaccGCGguccuUCGCgggaGCAGGCUCAc -3'
miRNA:   3'- -CUGUGGU--------------UGCac---AGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 78314 0.7 0.630027
Target:  5'- cGCcCCGGCGUG-CG-UGCGGGCCCc -3'
miRNA:   3'- cUGuGGUUGCACaGCgACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 78785 0.69 0.694997
Target:  5'- gGACGCCcuggcgcggggcgugGACGcgGUCGCgaggcgcaGCGGGCCCc -3'
miRNA:   3'- -CUGUGG---------------UUGCa-CAGCGa-------CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 79352 0.66 0.831384
Target:  5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5'
21385 5' -57.6 NC_004812.1 + 79851 0.67 0.805636
Target:  5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3'
miRNA:   3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 80042 0.69 0.640228
Target:  5'- aGCACaugcGCGggggGUCGCUGCcggccgAGGCCCGc -3'
miRNA:   3'- cUGUGgu--UGCa---CAGCGACG------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 80840 0.66 0.831384
Target:  5'- gGGCACCGugGUGgUGCcgaGC-GGCCCc -3'
miRNA:   3'- -CUGUGGUugCACaGCGa--CGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 82263 0.7 0.609636
Target:  5'- -cCACCAGCGcG-CGCcGCAGGCUCGc -3'
miRNA:   3'- cuGUGGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 82818 0.68 0.75016
Target:  5'- gGGCGCCGGCGcccgccCGCUcGCGGaGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCaca---GCGA-CGUC-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 82887 0.72 0.490534
Target:  5'- cGACGUCAugGUGgCGCUGguGGCCg- -3'
miRNA:   3'- -CUGUGGUugCACaGCGACguCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 83069 0.81 0.159101
Target:  5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3'
miRNA:   3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83504 0.69 0.650424
Target:  5'- cGACgGCCAgGCG-GUgCGCgaGCAGGCCCGg -3'
miRNA:   3'- -CUG-UGGU-UGCaCA-GCGa-CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83763 0.69 0.688962
Target:  5'- gGACGCCAGCGcgcccaacagCGaCUGCAgcGGCCCGu -3'
miRNA:   3'- -CUGUGGUUGCaca-------GC-GACGU--CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 84683 0.67 0.805636
Target:  5'- cGCGCCGuccuCGc--CGCUGCAGcGCCCGc -3'
miRNA:   3'- cUGUGGUu---GCacaGCGACGUC-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 85810 0.69 0.680889
Target:  5'- gGACGCCGGgccCGUGUCGUgaaGCAGaCCCu -3'
miRNA:   3'- -CUGUGGUU---GCACAGCGa--CGUCcGGGu -5'
21385 5' -57.6 NC_004812.1 + 86480 0.77 0.273089
Target:  5'- uGCGCCAugGUcGUugacggagcCGCUGCGGGCCCc -3'
miRNA:   3'- cUGUGGUugCA-CA---------GCGACGUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.