miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 87632 0.66 0.847662
Target:  5'- cGGCACCAcuagcCGgaugCGCUGUaucAGGCCCu -3'
miRNA:   3'- -CUGUGGUu----GCaca-GCGACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 91190 0.72 0.500104
Target:  5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3'
miRNA:   3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 91314 0.68 0.730747
Target:  5'- gGGCACCug---GUCGCgGCGGGCCa- -3'
miRNA:   3'- -CUGUGGuugcaCAGCGaCGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 95563 0.68 0.75016
Target:  5'- cGACGCCGACGUGgcggucUCGCcGCucgucgucGGCCUc -3'
miRNA:   3'- -CUGUGGUUGCAC------AGCGaCGu-------CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 95663 0.68 0.75016
Target:  5'- cGAC-CCGACGUGUcggCGCUGUAcGGCagCCGc -3'
miRNA:   3'- -CUGuGGUUGCACA---GCGACGU-CCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 96174 0.68 0.7405
Target:  5'- gGGCGgCGGCGaggugGUCGCgccggaGCGGGUCCAg -3'
miRNA:   3'- -CUGUgGUUGCa----CAGCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 96357 0.69 0.690976
Target:  5'- cGGCGCCccGACGg--UGCUGCcgcGGCCCAc -3'
miRNA:   3'- -CUGUGG--UUGCacaGCGACGu--CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 97388 0.67 0.805636
Target:  5'- -uCGCgGGCGUGggCGC-GCGGGCCUc -3'
miRNA:   3'- cuGUGgUUGCACa-GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 100017 0.67 0.769161
Target:  5'- cGCGCCGcGCGaucGUCGCUGCAuggcGGCCg- -3'
miRNA:   3'- cUGUGGU-UGCa--CAGCGACGU----CCGGgu -5'
21385 5' -57.6 NC_004812.1 + 100397 0.72 0.519486
Target:  5'- cGAgGCCGACGcccUGCUGgAGGCCCAc -3'
miRNA:   3'- -CUgUGGUUGCacaGCGACgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 101221 0.66 0.831384
Target:  5'- cGACGCaCAucgguucauGCGUGccUCGCUGCugcGGCaCCAc -3'
miRNA:   3'- -CUGUG-GU---------UGCAC--AGCGACGu--CCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 107095 0.67 0.805636
Target:  5'- -uCGCCGACGgggGUCGUguuggUGCGGGUgCGg -3'
miRNA:   3'- cuGUGGUUGCa--CAGCG-----ACGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 109251 0.67 0.768222
Target:  5'- uGACGCCGAgggaggcCGUGUUGCgggGCgcgaccgcagAGGCCUAc -3'
miRNA:   3'- -CUGUGGUU-------GCACAGCGa--CG----------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 109315 0.66 0.831384
Target:  5'- cGCGCCGGCGg--CGCUGgAGGCg-- -3'
miRNA:   3'- cUGUGGUUGCacaGCGACgUCCGggu -5'
21385 5' -57.6 NC_004812.1 + 110296 0.66 0.839617
Target:  5'- uGGCGgCGGC-UGUCGCccGCGcGGCCCGc -3'
miRNA:   3'- -CUGUgGUUGcACAGCGa-CGU-CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 111555 0.69 0.679878
Target:  5'- uGCACCAGCGg--CGCUGCAuguucggcgugguGaGCCCGg -3'
miRNA:   3'- cUGUGGUUGCacaGCGACGU-------------C-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 112526 0.67 0.778484
Target:  5'- uACGCCAccGCG-GUC-CUGCGGGCgCCc -3'
miRNA:   3'- cUGUGGU--UGCaCAGcGACGUCCG-GGu -5'
21385 5' -57.6 NC_004812.1 + 113384 0.67 0.777557
Target:  5'- aGCGCCGggucuccugggagACGcUGgCGCUGCAcGGCCCc -3'
miRNA:   3'- cUGUGGU-------------UGC-ACaGCGACGU-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 116396 0.76 0.313874
Target:  5'- aGGCGCgGGCG-GUCGCcgauccgcUGCGGGCCCGc -3'
miRNA:   3'- -CUGUGgUUGCaCAGCG--------ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 119416 0.66 0.822971
Target:  5'- cGGC-CCcGCGcugcUGaCGCUGCAGGUCCu -3'
miRNA:   3'- -CUGuGGuUGC----ACaGCGACGUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.