Results 101 - 120 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 119935 | 0.66 | 0.845269 |
Target: 5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3' miRNA: 3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 121151 | 0.68 | 0.730747 |
Target: 5'- cGACGCCGcgGCGcUGcagCGCUGCgaGGGCCgGg -3' miRNA: 3'- -CUGUGGU--UGC-ACa--GCGACG--UCCGGgU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 125257 | 0.67 | 0.769161 |
Target: 5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3' miRNA: 3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 126674 | 0.66 | 0.814386 |
Target: 5'- cGACGCCGuCGUGcUGCUcggcuccacccGCGGGCCg- -3' miRNA: 3'- -CUGUGGUuGCACaGCGA-----------CGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 127292 | 0.68 | 0.701014 |
Target: 5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3' miRNA: 3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 127513 | 0.67 | 0.79673 |
Target: 5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3' miRNA: 3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 127713 | 0.75 | 0.359105 |
Target: 5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3' miRNA: 3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128300 | 0.7 | 0.609636 |
Target: 5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3' miRNA: 3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128705 | 0.7 | 0.630027 |
Target: 5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3' miRNA: 3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128915 | 0.77 | 0.27958 |
Target: 5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3' miRNA: 3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128949 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3' miRNA: 3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128988 | 0.67 | 0.778484 |
Target: 5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3' miRNA: 3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129226 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3' miRNA: 3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129366 | 0.69 | 0.670762 |
Target: 5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3' miRNA: 3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129406 | 0.73 | 0.462354 |
Target: 5'- gGACGCUGACGccgcGUCGCUGCggcGGGCCg- -3' miRNA: 3'- -CUGUGGUUGCa---CAGCGACG---UCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129879 | 0.67 | 0.79673 |
Target: 5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3' miRNA: 3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 130422 | 0.68 | 0.730747 |
Target: 5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3' miRNA: 3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 133723 | 0.75 | 0.328457 |
Target: 5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3' miRNA: 3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 135478 | 1.09 | 0.001992 |
Target: 5'- cGACACCAACGUGUCGCUGCAGGCCCAg -3' miRNA: 3'- -CUGUGGUUGCACAGCGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 135812 | 0.68 | 0.701014 |
Target: 5'- gGGCGCCGACGcgGgcgCGCcGCAGGUgcuCCAg -3' miRNA: 3'- -CUGUGGUUGCa-Ca--GCGaCGUCCG---GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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