Results 61 - 80 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 95563 | 0.68 | 0.75016 |
Target: 5'- cGACGCCGACGUGgcggucUCGCcGCucgucgucGGCCUc -3' miRNA: 3'- -CUGUGGUUGCAC------AGCGaCGu-------CCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 91314 | 0.68 | 0.730747 |
Target: 5'- gGGCACCug---GUCGCgGCGGGCCa- -3' miRNA: 3'- -CUGUGGuugcaCAGCGaCGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 91190 | 0.72 | 0.500104 |
Target: 5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3' miRNA: 3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 87632 | 0.66 | 0.847662 |
Target: 5'- cGGCACCAcuagcCGgaugCGCUGUaucAGGCCCu -3' miRNA: 3'- -CUGUGGUu----GCaca-GCGACG---UCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 86480 | 0.77 | 0.273089 |
Target: 5'- uGCGCCAugGUcGUugacggagcCGCUGCGGGCCCc -3' miRNA: 3'- cUGUGGUugCA-CA---------GCGACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 85810 | 0.69 | 0.680889 |
Target: 5'- gGACGCCGGgccCGUGUCGUgaaGCAGaCCCu -3' miRNA: 3'- -CUGUGGUU---GCACAGCGa--CGUCcGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 84683 | 0.67 | 0.805636 |
Target: 5'- cGCGCCGuccuCGc--CGCUGCAGcGCCCGc -3' miRNA: 3'- cUGUGGUu---GCacaGCGACGUC-CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83763 | 0.69 | 0.688962 |
Target: 5'- gGACGCCAGCGcgcccaacagCGaCUGCAgcGGCCCGu -3' miRNA: 3'- -CUGUGGUUGCaca-------GC-GACGU--CCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83504 | 0.69 | 0.650424 |
Target: 5'- cGACgGCCAgGCG-GUgCGCgaGCAGGCCCGg -3' miRNA: 3'- -CUG-UGGU-UGCaCA-GCGa-CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83069 | 0.81 | 0.159101 |
Target: 5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3' miRNA: 3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82887 | 0.72 | 0.490534 |
Target: 5'- cGACGUCAugGUGgCGCUGguGGCCg- -3' miRNA: 3'- -CUGUGGUugCACaGCGACguCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82818 | 0.68 | 0.75016 |
Target: 5'- gGGCGCCGGCGcccgccCGCUcGCGGaGCCCGc -3' miRNA: 3'- -CUGUGGUUGCaca---GCGA-CGUC-CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82263 | 0.7 | 0.609636 |
Target: 5'- -cCACCAGCGcG-CGCcGCAGGCUCGc -3' miRNA: 3'- cuGUGGUUGCaCaGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 80840 | 0.66 | 0.831384 |
Target: 5'- gGGCACCGugGUGgUGCcgaGC-GGCCCc -3' miRNA: 3'- -CUGUGGUugCACaGCGa--CGuCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 80042 | 0.69 | 0.640228 |
Target: 5'- aGCACaugcGCGggggGUCGCUGCcggccgAGGCCCGc -3' miRNA: 3'- cUGUGgu--UGCa---CAGCGACG------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 79851 | 0.67 | 0.805636 |
Target: 5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3' miRNA: 3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 79352 | 0.66 | 0.831384 |
Target: 5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3' miRNA: 3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78785 | 0.69 | 0.694997 |
Target: 5'- gGACGCCcuggcgcggggcgugGACGcgGUCGCgaggcgcaGCGGGCCCc -3' miRNA: 3'- -CUGUGG---------------UUGCa-CAGCGa-------CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78314 | 0.7 | 0.630027 |
Target: 5'- cGCcCCGGCGUG-CG-UGCGGGCCCc -3' miRNA: 3'- cUGuGGUUGCACaGCgACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78227 | 0.66 | 0.837166 |
Target: 5'- cGACGCCAgaaagucgcccaccGCGguccuUCGCgggaGCAGGCUCAc -3' miRNA: 3'- -CUGUGGU--------------UGCac---AGCGa---CGUCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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