miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 74563 0.66 0.814386
Target:  5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3'
miRNA:   3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 74157 0.66 0.831384
Target:  5'- cGGCGCCAACGUGuUCGCccugGCGcgcgaguacGGCUa- -3'
miRNA:   3'- -CUGUGGUUGCAC-AGCGa---CGU---------CCGGgu -5'
21385 5' -57.6 NC_004812.1 + 72829 0.7 0.619827
Target:  5'- -cCACCGACGggccgcugcaGUCGCUGUGGGCgCGc -3'
miRNA:   3'- cuGUGGUUGCa---------CAGCGACGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 70116 0.72 0.471655
Target:  5'- aGGCGCCgGGCGcGUgGCUGC-GGCCCGc -3'
miRNA:   3'- -CUGUGG-UUGCaCAgCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 68900 0.67 0.787677
Target:  5'- aGGCAcagcCCGAUGccGcCGCUGCGGGCCa- -3'
miRNA:   3'- -CUGU----GGUUGCa-CaGCGACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 65764 0.66 0.822971
Target:  5'- cGGCGCCGGCuuccgCGCcGCGGGCgCCGg -3'
miRNA:   3'- -CUGUGGUUGcaca-GCGaCGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 63341 0.73 0.417372
Target:  5'- aGCGCCAGCGagaacGUcCGCUGCAGGUUCGc -3'
miRNA:   3'- cUGUGGUUGCa----CA-GCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 60125 0.67 0.79673
Target:  5'- cGCGCCAgcgGCGUGUC-CUGCcccuccaggagGGGCCa- -3'
miRNA:   3'- cUGUGGU---UGCACAGcGACG-----------UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 59157 0.67 0.79673
Target:  5'- uGGCGCCGuccgACGgg-CGCagGCAGGCCUu -3'
miRNA:   3'- -CUGUGGU----UGCacaGCGa-CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 57232 0.66 0.831384
Target:  5'- aGCGCCGACacggCGCUGC-GGCUCGg -3'
miRNA:   3'- cUGUGGUUGcacaGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 55361 0.67 0.787677
Target:  5'- -cCGCCuGACGg--CGCUGC-GGCCCGu -3'
miRNA:   3'- cuGUGG-UUGCacaGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 54647 0.68 0.7405
Target:  5'- -uCACC-ACGgggGUCGCcGCcgcgGGGCCCAg -3'
miRNA:   3'- cuGUGGuUGCa--CAGCGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 54418 0.69 0.690976
Target:  5'- aGACGCCGccGgGUGUcgaugggccCGCcGCGGGCCCc -3'
miRNA:   3'- -CUGUGGU--UgCACA---------GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 49732 0.72 0.500104
Target:  5'- gGACgGCCGACGgggucgggGUCGCgGCggGGGCCCGg -3'
miRNA:   3'- -CUG-UGGUUGCa-------CAGCGaCG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 49071 0.67 0.79673
Target:  5'- -cCGCCGACGUGcUCGUcGCccAGGCCa- -3'
miRNA:   3'- cuGUGGUUGCAC-AGCGaCG--UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 47313 0.68 0.730747
Target:  5'- cGGCGCguACGUGcgggCGCgcagGUAGGCCUc -3'
miRNA:   3'- -CUGUGguUGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 47131 0.7 0.589312
Target:  5'- uGGCGCUgcugAACaaGUCGCUGCAGGgCCGc -3'
miRNA:   3'- -CUGUGG----UUGcaCAGCGACGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 46809 0.69 0.680889
Target:  5'- gGGCAUCGAagauccggGUGaUCGuCUGCGGGCCCc -3'
miRNA:   3'- -CUGUGGUUg-------CAC-AGC-GACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 43851 0.67 0.769161
Target:  5'- cGGCGCCGACGUccgggCGCgGCGGcGCCg- -3'
miRNA:   3'- -CUGUGGUUGCAca---GCGaCGUC-CGGgu -5'
21385 5' -57.6 NC_004812.1 + 43668 0.66 0.847662
Target:  5'- -uCACCAGCGacacggCGCUGCgcGGGCCg- -3'
miRNA:   3'- cuGUGGUUGCaca---GCGACG--UCCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.