Results 121 - 140 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 20959 | 0.66 | 0.814386 |
Target: 5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3' miRNA: 3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 20868 | 0.66 | 0.839617 |
Target: 5'- gGGCgACCAccuCGaUGUCGCccGcCGGGCCCAc -3' miRNA: 3'- -CUG-UGGUu--GC-ACAGCGa-C-GUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 20302 | 0.68 | 0.75016 |
Target: 5'- cGCGCCGGCGcagCGCgcgcGCAGGCaCCGc -3' miRNA: 3'- cUGUGGUUGCacaGCGa---CGUCCG-GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 19579 | 0.68 | 0.7405 |
Target: 5'- cGCACUGGgGUGUguccuggaucgcCGCcagGCGGGCCCAc -3' miRNA: 3'- cUGUGGUUgCACA------------GCGa--CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 18543 | 0.66 | 0.847662 |
Target: 5'- cGCGCUcGCGgccagCGCggcGCGGGCCCGc -3' miRNA: 3'- cUGUGGuUGCaca--GCGa--CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 17907 | 0.66 | 0.822971 |
Target: 5'- cGCGCCcGCG-GUCGUccggGCgcgAGGCCCGg -3' miRNA: 3'- cUGUGGuUGCaCAGCGa---CG---UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 13671 | 0.67 | 0.805636 |
Target: 5'- --aGCCGACGacggCGUUaGCGGGCCCGc -3' miRNA: 3'- cugUGGUUGCaca-GCGA-CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 9473 | 0.71 | 0.549088 |
Target: 5'- cACGCCGcgACGUGcUCGUgcGCAGGCCUg -3' miRNA: 3'- cUGUGGU--UGCAC-AGCGa-CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 7630 | 0.74 | 0.391697 |
Target: 5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3' miRNA: 3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 4914 | 0.68 | 0.730747 |
Target: 5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3' miRNA: 3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 4371 | 0.67 | 0.79673 |
Target: 5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3' miRNA: 3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3858 | 0.69 | 0.670762 |
Target: 5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3' miRNA: 3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3718 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3' miRNA: 3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3480 | 0.67 | 0.778484 |
Target: 5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3' miRNA: 3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3441 | 0.67 | 0.787677 |
Target: 5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3' miRNA: 3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3407 | 0.77 | 0.27958 |
Target: 5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3' miRNA: 3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3196 | 0.7 | 0.630027 |
Target: 5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3' miRNA: 3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 2792 | 0.7 | 0.609636 |
Target: 5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3' miRNA: 3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 2771 | 0.68 | 0.747273 |
Target: 5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3' miRNA: 3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 2204 | 0.75 | 0.359105 |
Target: 5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3' miRNA: 3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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