miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 130422 0.68 0.730747
Target:  5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3'
miRNA:   3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 154381 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 139422 0.68 0.710994
Target:  5'- cGACACCGggGCG-GcCGgUGCuGGCCCu -3'
miRNA:   3'- -CUGUGGU--UGCaCaGCgACGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 135812 0.68 0.701014
Target:  5'- gGGCGCCGACGcgGgcgCGCcGCAGGUgcuCCAg -3'
miRNA:   3'- -CUGUGGUUGCa-Ca--GCGaCGUCCG---GGU- -5'
21385 5' -57.6 NC_004812.1 + 127292 0.68 0.701014
Target:  5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 144801 0.68 0.701014
Target:  5'- cACACCGACGUGUCcGUcaUGCcgaucGCCCAc -3'
miRNA:   3'- cUGUGGUUGCACAG-CG--ACGuc---CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129366 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 138986 0.69 0.670762
Target:  5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 111555 0.69 0.679878
Target:  5'- uGCACCAGCGg--CGCUGCAuguucggcgugguGaGCCCGg -3'
miRNA:   3'- cUGUGGUUGCacaGCGACGU-------------C-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 46809 0.69 0.680889
Target:  5'- gGGCAUCGAagauccggGUGaUCGuCUGCGGGCCCc -3'
miRNA:   3'- -CUGUGGUUg-------CAC-AGC-GACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 153186 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83763 0.69 0.688962
Target:  5'- gGACGCCAGCGcgcccaacagCGaCUGCAgcGGCCCGu -3'
miRNA:   3'- -CUGUGGUUGCaca-------GC-GACGU--CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 96357 0.69 0.690976
Target:  5'- cGGCGCCccGACGg--UGCUGCcgcGGCCCAc -3'
miRNA:   3'- -CUGUGG--UUGCacaGCGACGu--CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2204 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 28495 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 133723 0.75 0.328457
Target:  5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3'
miRNA:   3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 116396 0.76 0.313874
Target:  5'- aGGCGCgGGCG-GUCGCcgauccgcUGCGGGCCCGc -3'
miRNA:   3'- -CUGUGgUUGCaCAGCG--------ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3407 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 83069 0.81 0.159101
Target:  5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3'
miRNA:   3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 146341 0.66 0.850826
Target:  5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3'
miRNA:   3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.