miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 29643 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 141542 0.69 0.650424
Target:  5'- gGGCGgCGACGUGUCGCcGCcaguccgccuccAGGuCCCGg -3'
miRNA:   3'- -CUGUgGUUGCACAGCGaCG------------UCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 3858 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 85810 0.69 0.680889
Target:  5'- gGACGCCGGgccCGUGUCGUgaaGCAGaCCCu -3'
miRNA:   3'- -CUGUGGUU---GCACAGCGa--CGUCcGGGu -5'
21385 5' -57.6 NC_004812.1 + 27678 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 54418 0.69 0.690976
Target:  5'- aGACGCCGccGgGUGUcgaugggccCGCcGCGGGCCCc -3'
miRNA:   3'- -CUGUGGU--UgCACA---------GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 138279 0.71 0.539157
Target:  5'- cGCGCCGcgcccugcggGCGgugGUCGCgGCGGGCUCGg -3'
miRNA:   3'- cUGUGGU----------UGCa--CAGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 100397 0.72 0.519486
Target:  5'- cGAgGCCGACGcccUGCUGgAGGCCCAc -3'
miRNA:   3'- -CUgUGGUUGCacaGCGACgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83069 0.81 0.159101
Target:  5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3'
miRNA:   3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3407 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 116396 0.76 0.313874
Target:  5'- aGGCGCgGGCG-GUCGCcgauccgcUGCGGGCCCGc -3'
miRNA:   3'- -CUGUGgUUGCaCAGCG--------ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 133723 0.75 0.328457
Target:  5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3'
miRNA:   3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 28495 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2204 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 38531 0.74 0.391697
Target:  5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3'
miRNA:   3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 136778 0.73 0.417372
Target:  5'- cGCGCUGuacGCGUGcgCGCUGguGGCCCu -3'
miRNA:   3'- cUGUGGU---UGCACa-GCGACguCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 63341 0.73 0.417372
Target:  5'- aGCGCCAGCGagaacGUcCGCUGCAGGUUCGc -3'
miRNA:   3'- cUGUGGUUGCa----CA-GCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129406 0.73 0.462354
Target:  5'- gGACGCUGACGccgcGUCGCUGCggcGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCa---CAGCGACG---UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 82887 0.72 0.490534
Target:  5'- cGACGUCAugGUGgCGCUGguGGCCg- -3'
miRNA:   3'- -CUGUGGUugCACaGCGACguCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 136632 0.72 0.513639
Target:  5'- --uGCCGAgGUGUCgaucgccucgacggaGCUGCAGGCCUu -3'
miRNA:   3'- cugUGGUUgCACAG---------------CGACGUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.