miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 153186 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128705 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 37510 0.7 0.619827
Target:  5'- cGCGCCuGCGUGUUGUggaGCAGGCggCCGu -3'
miRNA:   3'- cUGUGGuUGCACAGCGa--CGUCCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 128300 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 91190 0.72 0.500104
Target:  5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3'
miRNA:   3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138712 0.67 0.787677
Target:  5'- gGACgACC-GCGg--CGCgGCGGGCCCGc -3'
miRNA:   3'- -CUG-UGGuUGCacaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 142914 0.67 0.787677
Target:  5'- -cCGCCAGCcccUC-CUGCGGGCCCGc -3'
miRNA:   3'- cuGUGGUUGcacAGcGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128949 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 65764 0.66 0.822971
Target:  5'- cGGCGCCGGCuuccgCGCcGCGGGCgCCGg -3'
miRNA:   3'- -CUGUGGUUGcaca-GCGaCGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 21412 0.66 0.822971
Target:  5'- cGCGCCGACGcGUCGCaGC--GCCCc -3'
miRNA:   3'- cUGUGGUUGCaCAGCGaCGucCGGGu -5'
21385 5' -57.6 NC_004812.1 + 155274 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 74563 0.66 0.814386
Target:  5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3'
miRNA:   3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 32059 0.66 0.814386
Target:  5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3'
miRNA:   3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 20959 0.66 0.814386
Target:  5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3'
miRNA:   3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 97388 0.67 0.805636
Target:  5'- -uCGCgGGCGUGggCGC-GCGGGCCUc -3'
miRNA:   3'- cuGUGgUUGCACa-GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 79851 0.67 0.805636
Target:  5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3'
miRNA:   3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129879 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 127513 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 60125 0.67 0.79673
Target:  5'- cGCGCCAgcgGCGUGUC-CUGCcccuccaggagGGGCCa- -3'
miRNA:   3'- cUGUGGU---UGCACAGcGACG-----------UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 129226 0.67 0.787677
Target:  5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.