miRNA display CGI


Results 101 - 120 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 79851 0.67 0.805636
Target:  5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3'
miRNA:   3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 97388 0.67 0.805636
Target:  5'- -uCGCgGGCGUGggCGC-GCGGGCCUc -3'
miRNA:   3'- cuGUGgUUGCACa-GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 79352 0.66 0.831384
Target:  5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5'
21385 5' -57.6 NC_004812.1 + 65764 0.66 0.822971
Target:  5'- cGGCGCCGGCuuccgCGCcGCGGGCgCCGg -3'
miRNA:   3'- -CUGUGGUUGcaca-GCGaCGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 20959 0.66 0.814386
Target:  5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3'
miRNA:   3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 155274 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 128988 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 32059 0.66 0.814386
Target:  5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3'
miRNA:   3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 139422 0.68 0.710994
Target:  5'- cGACACCGggGCG-GcCGgUGCuGGCCCu -3'
miRNA:   3'- -CUGUGGU--UGCaCaGCgACGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 154381 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 2771 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 722 0.68 0.75016
Target:  5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3'
miRNA:   3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5'
21385 5' -57.6 NC_004812.1 + 20302 0.68 0.75016
Target:  5'- cGCGCCGGCGcagCGCgcgcGCAGGCaCCGc -3'
miRNA:   3'- cUGUGGUUGCacaGCGa---CGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 95663 0.68 0.75016
Target:  5'- cGAC-CCGACGUGUcggCGCUGUAcGGCagCCGc -3'
miRNA:   3'- -CUGuGGUUGCACA---GCGACGU-CCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 109251 0.67 0.768222
Target:  5'- uGACGCCGAgggaggcCGUGUUGCgggGCgcgaccgcagAGGCCUAc -3'
miRNA:   3'- -CUGUGGUU-------GCACAGCGa--CG----------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 152858 0.67 0.769161
Target:  5'- cGGCGCCGcCGcGcCGCUGCuggcgcgcGGCCCGc -3'
miRNA:   3'- -CUGUGGUuGCaCaGCGACGu-------CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 100017 0.67 0.769161
Target:  5'- cGCGCCGcGCGaucGUCGCUGCAuggcGGCCg- -3'
miRNA:   3'- cUGUGGU-UGCa--CAGCGACGU----CCGGgu -5'
21385 5' -57.6 NC_004812.1 + 125257 0.67 0.769161
Target:  5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3'
miRNA:   3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 23508 0.67 0.778484
Target:  5'- cGCACU-ACGUGcgggUGCUGCugGGGCCCc -3'
miRNA:   3'- cUGUGGuUGCACa---GCGACG--UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 113384 0.67 0.777557
Target:  5'- aGCGCCGggucuccugggagACGcUGgCGCUGCAcGGCCCc -3'
miRNA:   3'- cUGUGGU-------------UGC-ACaGCGACGU-CCGGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.