miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 80238 0.67 0.88967
Target:  5'- gCGCCUCggCGcCCuGGgggCGGcGGCCg -3'
miRNA:   3'- gGCGGAGuaGCaGGuCCa--GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 34736 0.67 0.88967
Target:  5'- gCCGCCgaUCGcCGUCCuGGggCGgccccGGGGCCu -3'
miRNA:   3'- -GGCGG--AGUaGCAGGuCCa-GC-----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 4828 0.67 0.88967
Target:  5'- -gGCCUCGUCGgcgUCCAGGggcacGGCCc -3'
miRNA:   3'- ggCGGAGUAGC---AGGUCCagcucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 51691 0.67 0.88967
Target:  5'- -gGCCUCGguaccgCGUgCCAGGaaGAGcGCCu -3'
miRNA:   3'- ggCGGAGUa-----GCA-GGUCCagCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 94587 0.67 0.88967
Target:  5'- gCCGUCUC-UCGUUCccggccgugcGGUCGAGccgcGGCCc -3'
miRNA:   3'- -GGCGGAGuAGCAGGu---------CCAGCUC----UCGG- -5'
21387 3' -56.7 NC_004812.1 + 40662 0.67 0.88967
Target:  5'- gCuCCUCGUCcguacccggGUCCGGGUCGuuuucuuccacGAGCCc -3'
miRNA:   3'- gGcGGAGUAG---------CAGGUCCAGCu----------CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130336 0.67 0.88967
Target:  5'- -gGCCUCGUCGgcgUCCAGGggcacGGCCc -3'
miRNA:   3'- ggCGGAGUAGC---AGGUCCagcucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 106123 0.67 0.887676
Target:  5'- gCGCCUCGgcgcccggCGUCCacacgcgcccgccgAGGcCGAGcucGGCCu -3'
miRNA:   3'- gGCGGAGUa-------GCAGG--------------UCCaGCUC---UCGG- -5'
21387 3' -56.7 NC_004812.1 + 19627 0.67 0.885663
Target:  5'- gCCGCCUCccgGUCCAGGcgcucuagcuccUguguggugagaccgcCGGGGGCCg -3'
miRNA:   3'- -GGCGGAGuagCAGGUCC------------A---------------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 33056 0.67 0.882949
Target:  5'- gCCGCCUCGcUCGccCCGGGaCGcccGGCCc -3'
miRNA:   3'- -GGCGGAGU-AGCa-GGUCCaGCuc-UCGG- -5'
21387 3' -56.7 NC_004812.1 + 4677 0.67 0.882949
Target:  5'- gCGCCUCGUCcaccUCCGGcG-CGccccAGAGCCc -3'
miRNA:   3'- gGCGGAGUAGc---AGGUC-CaGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 47169 0.67 0.882949
Target:  5'- gCCGcCCUCucccUCGg-CGGGccUCGGGGGCCc -3'
miRNA:   3'- -GGC-GGAGu---AGCagGUCC--AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 9075 0.67 0.882949
Target:  5'- cCCGCCgcc-CGUCCAGG-CGGcGGCg -3'
miRNA:   3'- -GGCGGaguaGCAGGUCCaGCUcUCGg -5'
21387 3' -56.7 NC_004812.1 + 69743 0.67 0.882949
Target:  5'- uUGCCggCGUCGcCCAGGaaccGAGCCa -3'
miRNA:   3'- gGCGGa-GUAGCaGGUCCagcuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 22642 0.67 0.882949
Target:  5'- cCCGCCacccgggggcUCccgCGUgcCCGGGgccggCGGGAGCCc -3'
miRNA:   3'- -GGCGG----------AGua-GCA--GGUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 31336 0.67 0.882949
Target:  5'- gCCGCCgCGUacgcCGUCCGGaagaaGUCGucGGCCg -3'
miRNA:   3'- -GGCGGaGUA----GCAGGUC-----CAGCucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 131394 0.67 0.882949
Target:  5'- gCCgGCCUCAUauacccCGUCCGccGG-CGggcGGAGCCg -3'
miRNA:   3'- -GG-CGGAGUA------GCAGGU--CCaGC---UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130185 0.67 0.882949
Target:  5'- gCGCCUCGUCcaccUCCGGcG-CGccccAGAGCCc -3'
miRNA:   3'- gGCGGAGUAGc---AGGUC-CaGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 11434 0.67 0.882949
Target:  5'- aCCGCCgg--CGggaGGGUgcCGGGAGCCg -3'
miRNA:   3'- -GGCGGaguaGCaggUCCA--GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 2155 0.67 0.882949
Target:  5'- gCCGCCUCGcUCGccCCGGGaCGcccGGCCc -3'
miRNA:   3'- -GGCGGAGU-AGCa-GGUCCaGCuc-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.