miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 3920 0.68 0.891343
Target:  5'- gGCGGCGGGGCc--GcgCgGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGccaCuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 98768 0.68 0.891343
Target:  5'- cGCGGCGGcGGCGaGUGggCcGCcgaGGCGGCg -3'
miRNA:   3'- -CGUCGUC-CUGC-CACuaGaCG---UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129428 0.68 0.891343
Target:  5'- gGCGGCGGGGCc--GcgCgGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGccaCuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 2539 0.68 0.884362
Target:  5'- gGCAGCAcGGcGCGGcGGUaCUcgcGCGGCGGCa -3'
miRNA:   3'- -CGUCGU-CC-UGCCaCUA-GA---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 117362 0.68 0.884362
Target:  5'- cGCGGUGGGGCGGccGcgCccgGCAGCGcgGCg -3'
miRNA:   3'- -CGUCGUCCUGCCa-CuaGa--CGUCGU--UG- -5'
21389 3' -54.2 NC_004812.1 + 111463 0.68 0.884362
Target:  5'- cCAGgAGG-CGGUGAaCUGCcucGCGGCg -3'
miRNA:   3'- cGUCgUCCuGCCACUaGACGu--CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 148263 0.68 0.884362
Target:  5'- cGCGGUGGGGCGGccGcgCccgGCAGCGcgGCg -3'
miRNA:   3'- -CGUCGUCCUGCCa-CuaGa--CGUCGU--UG- -5'
21389 3' -54.2 NC_004812.1 + 84913 0.68 0.884362
Target:  5'- cGCuGCGGGGCGG-GcAUCUGC-GCcACc -3'
miRNA:   3'- -CGuCGUCCUGCCaC-UAGACGuCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 128047 0.68 0.884362
Target:  5'- gGCAGCAcGGcGCGGcGGUaCUcgcGCGGCGGCa -3'
miRNA:   3'- -CGUCGU-CC-UGCCaCUA-GA---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 109109 0.68 0.884362
Target:  5'- gGUGGCGGcGAcgucccCGGUGAUCUucugagGCAGCAGg -3'
miRNA:   3'- -CGUCGUC-CU------GCCACUAGA------CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 108052 0.68 0.877146
Target:  5'- cGCuGCGGG-CGGUGAgggggaagUCgGCGGCGguGCg -3'
miRNA:   3'- -CGuCGUCCuGCCACU--------AGaCGUCGU--UG- -5'
21389 3' -54.2 NC_004812.1 + 56740 0.68 0.877146
Target:  5'- cGCGGCc-GugGGggccCUGCGGCAGCg -3'
miRNA:   3'- -CGUCGucCugCCacuaGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 75457 0.68 0.877146
Target:  5'- cGCcGCGGaGGCGGacGGUCUGCuccGCGGCc -3'
miRNA:   3'- -CGuCGUC-CUGCCa-CUAGACGu--CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 68969 0.68 0.876412
Target:  5'- -gAGUGGGucgUGGUGGUCUGCggguucaccagguAGCAGCu -3'
miRNA:   3'- cgUCGUCCu--GCCACUAGACG-------------UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 116442 0.68 0.874196
Target:  5'- gGCcuGCGGGGCGGccgucgcgcugugGGUC-GCGGCGGCg -3'
miRNA:   3'- -CGu-CGUCCUGCCa------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4243 0.68 0.869702
Target:  5'- gGCGGCGGcGGCGGcgGcgCccgccGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCa-CuaGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 68020 0.68 0.869702
Target:  5'- aGCA-CAGGGCGuugcUGGUCUGCAucgccgccaGCAGCa -3'
miRNA:   3'- -CGUcGUCCUGCc---ACUAGACGU---------CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 133211 0.68 0.869702
Target:  5'- aCAGCgggaaguugAGGGCGGcGAUC-GUGGCGACg -3'
miRNA:   3'- cGUCG---------UCCUGCCaCUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129751 0.68 0.869702
Target:  5'- gGCGGCGGcGGCGGcgGcgCccgccGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCa-CuaGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 137173 0.68 0.869702
Target:  5'- aGguGCGGGA-GGcGGUcCUGCGGCcGCg -3'
miRNA:   3'- -CguCGUCCUgCCaCUA-GACGUCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.