miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 116321 0.67 0.759179
Target:  5'- cCGUUGUCgCCCUgcuGGCGGCGgCGCa-- -3'
miRNA:   3'- cGCAACGG-GGGA---UCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 137818 0.67 0.758242
Target:  5'- cGCGgagcagGCCCCCUGGCcccgggagguccuGGCGcUgGCGa- -3'
miRNA:   3'- -CGCaa----CGGGGGAUCG-------------UCGC-AgCGCac -5'
21389 5' -58.6 NC_004812.1 + 137961 0.67 0.749764
Target:  5'- cGCGgcgGCCCCUcgucggGGCGGgGUCGgGg- -3'
miRNA:   3'- -CGCaa-CGGGGGa-----UCGUCgCAGCgCac -5'
21389 5' -58.6 NC_004812.1 + 117113 0.67 0.740249
Target:  5'- gGCGcgGCCUCCgGGCGGCG-CGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 44338 0.67 0.740249
Target:  5'- gGCGcgGCCCag-AGCGGCG-CGCGg- -3'
miRNA:   3'- -CGCaaCGGGggaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 36581 0.67 0.740249
Target:  5'- aCGUUGCCgCggGGCuGCGUgaGCGUGa -3'
miRNA:   3'- cGCAACGGgGgaUCGuCGCAg-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 90798 0.67 0.740249
Target:  5'- cGgGgaGCCaguccacggCCUGGCGGCGUCGUGg- -3'
miRNA:   3'- -CgCaaCGGg--------GGAUCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 148014 0.67 0.740249
Target:  5'- gGCGcgGCCUCCgGGCGGCG-CGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 137012 0.67 0.730644
Target:  5'- gGCGUggGCCCgCCUGGCGGCGaUC-Ca-- -3'
miRNA:   3'- -CGCAa-CGGG-GGAUCGUCGC-AGcGcac -5'
21389 5' -58.6 NC_004812.1 + 30317 0.68 0.720956
Target:  5'- cGCGggcaccaggaacgGCCCCgCgagcucgaacgccAGCGGCGUCGCGUc -3'
miRNA:   3'- -CGCaa-----------CGGGG-Ga------------UCGUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 77205 0.68 0.720956
Target:  5'- aGCGgcgGCCCCCgAGcCAGCuggCGCGg- -3'
miRNA:   3'- -CGCaa-CGGGGGaUC-GUCGca-GCGCac -5'
21389 5' -58.6 NC_004812.1 + 25896 0.68 0.720956
Target:  5'- cGCGgcGCCCgcgcccagcgCCgcgGGCGcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGG----------GGa--UCGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 108263 0.68 0.711195
Target:  5'- gGCGgaGCCCUC-GGCGGCGUcCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCA-GCGcac -5'
21389 5' -58.6 NC_004812.1 + 36414 0.68 0.701369
Target:  5'- -gGUUGCCCgCgacGaCGGCGUUGCGUa -3'
miRNA:   3'- cgCAACGGGgGau-C-GUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 55394 0.68 0.701369
Target:  5'- cGCGgcGCCCCugCUGGCGGC--CGCGg- -3'
miRNA:   3'- -CGCaaCGGGG--GAUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 129763 0.68 0.701369
Target:  5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3'
miRNA:   3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 125007 0.68 0.701369
Target:  5'- -aGgcGCCCCUgcGCGGCG-CGCGg- -3'
miRNA:   3'- cgCaaCGGGGGauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 4255 0.68 0.701369
Target:  5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3'
miRNA:   3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 32485 0.68 0.691487
Target:  5'- gGCGcgGCCCgUcGGCGGCGUacCGCGUu -3'
miRNA:   3'- -CGCaaCGGGgGaUCGUCGCA--GCGCAc -5'
21389 5' -58.6 NC_004812.1 + 78774 0.68 0.690496
Target:  5'- cGCGgcGCCcuggacgCCCUGGC-GCGggGCGUGg -3'
miRNA:   3'- -CGCaaCGG-------GGGAUCGuCGCagCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.