miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21391 3' -57.8 NC_004812.1 + 133968 0.68 0.73337
Target:  5'- cACGCGGGAg--C-CCCCGGGuGgcGg -3'
miRNA:   3'- uUGCGCCCUaaaGaGGGGCCC-CuaCa -5'
21391 3' -57.8 NC_004812.1 + 132527 0.68 0.73337
Target:  5'- --gGCGGGucggcgcacAUUUC-CCCCGGGGAc-- -3'
miRNA:   3'- uugCGCCC---------UAAAGaGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 7018 0.68 0.73337
Target:  5'- --gGCGGGucggcgcacAUUUC-CCCCGGGGAc-- -3'
miRNA:   3'- uugCGCCC---------UAAAGaGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 110154 0.68 0.723602
Target:  5'- gGACGCGGaGGcccuggCCCgCGGGGGUGUc -3'
miRNA:   3'- -UUGCGCC-CUaaaga-GGG-GCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 105258 0.68 0.713756
Target:  5'- gGGCGCGGGcgg-CUCCCCGGcGAc-- -3'
miRNA:   3'- -UUGCGCCCuaaaGAGGGGCCcCUaca -5'
21391 3' -57.8 NC_004812.1 + 156373 0.69 0.67378
Target:  5'- cGCGCGGGAgccUUgggCCCCGcGGGAg-- -3'
miRNA:   3'- uUGCGCCCUaa-AGa--GGGGC-CCCUaca -5'
21391 3' -57.8 NC_004812.1 + 125472 0.69 0.67378
Target:  5'- cGCGCGGGAgccUUgggCCCCGcGGGAg-- -3'
miRNA:   3'- uUGCGCCCUaa-AGa--GGGGC-CCCUaca -5'
21391 3' -57.8 NC_004812.1 + 71835 0.69 0.66368
Target:  5'- gGACGUGGGcgUuggcgUCUccggCCCgGGGGAUGg -3'
miRNA:   3'- -UUGCGCCCuaA-----AGA----GGGgCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 76853 0.69 0.643414
Target:  5'- cGGCGuCGGGcaggcacgUCcaccCCCCGGGGAUGUc -3'
miRNA:   3'- -UUGC-GCCCuaa-----AGa---GGGGCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 144624 0.7 0.592731
Target:  5'- uGACgGCGGGAcgcgcgccaUCgcgUCCCGGGGAUGUc -3'
miRNA:   3'- -UUG-CGCCCUaa-------AGa--GGGGCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 52059 0.7 0.592731
Target:  5'- cACGCGGGca-UCggCCaCCGGGGGUGc -3'
miRNA:   3'- uUGCGCCCuaaAGa-GG-GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 26319 0.7 0.58265
Target:  5'- --gGCGGGGUUcgcggccgcUCgggggUCCCGGGGGUGg -3'
miRNA:   3'- uugCGCCCUAA---------AGa----GGGGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 71975 0.7 0.58265
Target:  5'- -cCGCGGGAggcUCacgcgCCCCGGGGcUGg -3'
miRNA:   3'- uuGCGCCCUaa-AGa----GGGGCCCCuACa -5'
21391 3' -57.8 NC_004812.1 + 13573 0.71 0.562601
Target:  5'- gGGCGCcGGAgcgagUUUCCCCGGGGGg-- -3'
miRNA:   3'- -UUGCGcCCUaa---AGAGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 105458 0.71 0.546697
Target:  5'- cGACGCGGGGcggggcgcgcgcCUCCCCGGGGuaGUa -3'
miRNA:   3'- -UUGCGCCCUaaa---------GAGGGGCCCCuaCA- -5'
21391 3' -57.8 NC_004812.1 + 59602 0.71 0.542742
Target:  5'- gGGCGCGGGcggcgCUCgcgaaCCGGGGGUGg -3'
miRNA:   3'- -UUGCGCCCuaaa-GAGg----GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 98720 0.71 0.532899
Target:  5'- cGGCGCGGGGUcgUUCUCgCgCGGGGGc-- -3'
miRNA:   3'- -UUGCGCCCUA--AAGAG-GgGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 131347 0.71 0.523121
Target:  5'- cGGCGUGcGGuAUUUCgCCCCGGGGAggGUu -3'
miRNA:   3'- -UUGCGC-CC-UAAAGaGGGGCCCCUa-CA- -5'
21391 3' -57.8 NC_004812.1 + 78963 0.73 0.429886
Target:  5'- cGACGCGGGAguacUUCCaCCGGGGGgcgGUu -3'
miRNA:   3'- -UUGCGCCCUaaa-GAGG-GGCCCCUa--CA- -5'
21391 3' -57.8 NC_004812.1 + 105836 0.74 0.378845
Target:  5'- cGGCGCGGGGUUcaUCUcggCCUCGGGGAcGUc -3'
miRNA:   3'- -UUGCGCCCUAA--AGA---GGGGCCCCUaCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.