Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21391 | 5' | -51.3 | NC_004812.1 | + | 31737 | 0.66 | 0.987381 |
Target: 5'- ---gGUCCGGGGUggccGGggGUcCUGGgGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 13456 | 0.66 | 0.987381 |
Target: 5'- ---gGUCuCGGGGguGggGggUGGCGu -3' miRNA: 3'- cuuaUAG-GCCCCguCuuUagACCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 58971 | 0.66 | 0.987381 |
Target: 5'- ---aAUCUGcGGGCGGggGUCgcgGGUc- -3' miRNA: 3'- cuuaUAGGC-CCCGUCuuUAGa--CCGuu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 25183 | 0.66 | 0.987381 |
Target: 5'- ----cUCCGGGGCGGc-GUCgcGGCGg -3' miRNA: 3'- cuuauAGGCCCCGUCuuUAGa-CCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 836 | 0.66 | 0.987381 |
Target: 5'- ---gGUCCGGGGUggccGGggGUcCUGGgGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 10522 | 0.66 | 0.983811 |
Target: 5'- cGGAgg-CgGGGGCGGGAaaGUCUcGGCGu -3' miRNA: 3'- -CUUauaGgCCCCGUCUU--UAGA-CCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 72301 | 0.66 | 0.983811 |
Target: 5'- -----gCCGGGGCGGGgggacggaucGAUCgGGCGc -3' miRNA: 3'- cuuauaGGCCCCGUCU----------UUAGaCCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 879 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 23598 | 0.66 | 0.981761 |
Target: 5'- ------gCGGGGCGGggGUUgGGCGc -3' miRNA: 3'- cuuauagGCCCCGUCuuUAGaCCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31884 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 136184 | 0.66 | 0.981761 |
Target: 5'- cGGAcGUCCGGGGCAGGgccgcgugucGAUCcaGCAGc -3' miRNA: 3'- -CUUaUAGGCCCCGUCU----------UUAGacCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 149106 | 0.66 | 0.981761 |
Target: 5'- ------gCGGGGCGGggGUUgGGCGc -3' miRNA: 3'- cuuauagGCCCCGUCuuUAGaCCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 931 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31832 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31780 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 146861 | 0.67 | 0.974445 |
Target: 5'- --cUGUCgagCGGGGCGGGGAcgUGGCAu -3' miRNA: 3'- cuuAUAG---GCCCCGUCUUUagACCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 38615 | 0.67 | 0.965196 |
Target: 5'- ---aGUCCGcGGCGGggGUCUccgcgccgGGCGAg -3' miRNA: 3'- cuuaUAGGCcCCGUCuuUAGA--------CCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 7714 | 0.67 | 0.965196 |
Target: 5'- ---aGUCCGcGGCGGggGUCUccgcgccgGGCGAg -3' miRNA: 3'- cuuaUAGGCcCCGUCuuUAGA--------CCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 74165 | 0.68 | 0.953818 |
Target: 5'- ---cGUCCGGGGuCAGGuagCUGGUc- -3' miRNA: 3'- cuuaUAGGCCCC-GUCUuuaGACCGuu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 19273 | 0.68 | 0.953818 |
Target: 5'- cGAAUAUCgGGGGCAGGGcccCcGGCc- -3' miRNA: 3'- -CUUAUAGgCCCCGUCUUua-GaCCGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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