miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21391 5' -51.3 NC_004812.1 + 58971 0.66 0.987381
Target:  5'- ---aAUCUGcGGGCGGggGUCgcgGGUc- -3'
miRNA:   3'- cuuaUAGGC-CCCGUCuuUAGa--CCGuu -5'
21391 5' -51.3 NC_004812.1 + 25183 0.66 0.987381
Target:  5'- ----cUCCGGGGCGGc-GUCgcGGCGg -3'
miRNA:   3'- cuuauAGGCCCCGUCuuUAGa-CCGUu -5'
21391 5' -51.3 NC_004812.1 + 13456 0.66 0.987381
Target:  5'- ---gGUCuCGGGGguGggGggUGGCGu -3'
miRNA:   3'- cuuaUAG-GCCCCguCuuUagACCGUu -5'
21391 5' -51.3 NC_004812.1 + 31737 0.66 0.987381
Target:  5'- ---gGUCCGGGGUggccGGggGUcCUGGgGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUu -5'
21391 5' -51.3 NC_004812.1 + 836 0.66 0.987381
Target:  5'- ---gGUCCGGGGUggccGGggGUcCUGGgGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUu -5'
21391 5' -51.3 NC_004812.1 + 10522 0.66 0.983811
Target:  5'- cGGAgg-CgGGGGCGGGAaaGUCUcGGCGu -3'
miRNA:   3'- -CUUauaGgCCCCGUCUU--UAGA-CCGUu -5'
21391 5' -51.3 NC_004812.1 + 72301 0.66 0.983811
Target:  5'- -----gCCGGGGCGGGgggacggaucGAUCgGGCGc -3'
miRNA:   3'- cuuauaGGCCCCGUCU----------UUAGaCCGUu -5'
21391 5' -51.3 NC_004812.1 + 136184 0.66 0.981761
Target:  5'- cGGAcGUCCGGGGCAGGgccgcgugucGAUCcaGCAGc -3'
miRNA:   3'- -CUUaUAGGCCCCGUCU----------UUAGacCGUU- -5'
21391 5' -51.3 NC_004812.1 + 31884 0.66 0.981761
Target:  5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5'
21391 5' -51.3 NC_004812.1 + 23598 0.66 0.981761
Target:  5'- ------gCGGGGCGGggGUUgGGCGc -3'
miRNA:   3'- cuuauagGCCCCGUCuuUAGaCCGUu -5'
21391 5' -51.3 NC_004812.1 + 149106 0.66 0.981761
Target:  5'- ------gCGGGGCGGggGUUgGGCGc -3'
miRNA:   3'- cuuauagGCCCCGUCuuUAGaCCGUu -5'
21391 5' -51.3 NC_004812.1 + 931 0.66 0.981761
Target:  5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5'
21391 5' -51.3 NC_004812.1 + 879 0.66 0.981761
Target:  5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5'
21391 5' -51.3 NC_004812.1 + 31832 0.66 0.981761
Target:  5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5'
21391 5' -51.3 NC_004812.1 + 31780 0.66 0.981761
Target:  5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3'
miRNA:   3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5'
21391 5' -51.3 NC_004812.1 + 146861 0.67 0.974445
Target:  5'- --cUGUCgagCGGGGCGGGGAcgUGGCAu -3'
miRNA:   3'- cuuAUAG---GCCCCGUCUUUagACCGUu -5'
21391 5' -51.3 NC_004812.1 + 7714 0.67 0.965196
Target:  5'- ---aGUCCGcGGCGGggGUCUccgcgccgGGCGAg -3'
miRNA:   3'- cuuaUAGGCcCCGUCuuUAGA--------CCGUU- -5'
21391 5' -51.3 NC_004812.1 + 38615 0.67 0.965196
Target:  5'- ---aGUCCGcGGCGGggGUCUccgcgccgGGCGAg -3'
miRNA:   3'- cuuaUAGGCcCCGUCuuUAGA--------CCGUU- -5'
21391 5' -51.3 NC_004812.1 + 74165 0.68 0.953818
Target:  5'- ---cGUCCGGGGuCAGGuagCUGGUc- -3'
miRNA:   3'- cuuaUAGGCCCC-GUCUuuaGACCGuu -5'
21391 5' -51.3 NC_004812.1 + 19273 0.68 0.953818
Target:  5'- cGAAUAUCgGGGGCAGGGcccCcGGCc- -3'
miRNA:   3'- -CUUAUAGgCCCCGUCUUua-GaCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.