Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21391 | 5' | -51.3 | NC_004812.1 | + | 121198 | 0.69 | 0.918272 |
Target: 5'- cGAcgAUCCGGcGGCAGcuGGcgCUGGCc- -3' miRNA: 3'- -CUuaUAGGCC-CCGUC--UUuaGACCGuu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 92331 | 0.75 | 0.635337 |
Target: 5'- uGGAUGaugCUGGGGUAGAGG-CUGGCAAa -3' miRNA: 3'- -CUUAUa--GGCCCCGUCUUUaGACCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 60103 | 0.76 | 0.581539 |
Target: 5'- cGggUGcCCGGGGCAGGGuccgccgCUGGCGg -3' miRNA: 3'- -CuuAUaGGCCCCGUCUUua-----GACCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 70329 | 0.78 | 0.497902 |
Target: 5'- -----gCCGGGGCAGggGUC-GGCGAg -3' miRNA: 3'- cuuauaGGCCCCGUCuuUAGaCCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 132402 | 1.06 | 0.009468 |
Target: 5'- gGAAUAUCCGGGGCAGAAAUCUGGCAAa -3' miRNA: 3'- -CUUAUAGGCCCCGUCUUUAGACCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 38615 | 0.67 | 0.965196 |
Target: 5'- ---aGUCCGcGGCGGggGUCUccgcgccgGGCGAg -3' miRNA: 3'- cuuaUAGGCcCCGUCuuUAGA--------CCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31737 | 0.66 | 0.987381 |
Target: 5'- ---gGUCCGGGGUggccGGggGUcCUGGgGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 13456 | 0.66 | 0.987381 |
Target: 5'- ---gGUCuCGGGGguGggGggUGGCGu -3' miRNA: 3'- cuuaUAG-GCCCCguCuuUagACCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31884 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31832 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 23598 | 0.66 | 0.981761 |
Target: 5'- ------gCGGGGCGGggGUUgGGCGc -3' miRNA: 3'- cuuauagGCCCCGUCuuUAGaCCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 93664 | 0.69 | 0.924143 |
Target: 5'- -----cCCGGGGCAGAAGUUgucGCAc -3' miRNA: 3'- cuuauaGGCCCCGUCUUUAGac-CGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 10522 | 0.66 | 0.983811 |
Target: 5'- cGGAgg-CgGGGGCGGGAaaGUCUcGGCGu -3' miRNA: 3'- -CUUauaGgCCCCGUCUU--UAGA-CCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 109838 | 0.69 | 0.929748 |
Target: 5'- -----aCCGGGGCgAGAucuccgCUGGCGAg -3' miRNA: 3'- cuuauaGGCCCCG-UCUuua---GACCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 31780 | 0.66 | 0.981761 |
Target: 5'- ---gGUCCGGGGUcgccGGggGUcCUGGgGGu -3' miRNA: 3'- cuuaUAGGCCCCG----UCuuUA-GACCgUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 25183 | 0.66 | 0.987381 |
Target: 5'- ----cUCCGGGGCGGc-GUCgcGGCGg -3' miRNA: 3'- cuuauAGGCCCCGUCuuUAGa-CCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 58971 | 0.66 | 0.987381 |
Target: 5'- ---aAUCUGcGGGCGGggGUCgcgGGUc- -3' miRNA: 3'- cuuaUAGGC-CCCGUCuuUAGa--CCGuu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 29378 | 0.68 | 0.944974 |
Target: 5'- gGAGgcgCgCGGGGCcgggcGGAGUCUGGCGGa -3' miRNA: 3'- -CUUauaG-GCCCCGu----CUUUAGACCGUU- -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 71776 | 0.71 | 0.836086 |
Target: 5'- ---cGUCCGGcuGGCAGAgguccgucaggguGAUCUGGCGc -3' miRNA: 3'- cuuaUAGGCC--CCGUCU-------------UUAGACCGUu -5' |
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21391 | 5' | -51.3 | NC_004812.1 | + | 72301 | 0.66 | 0.983811 |
Target: 5'- -----gCCGGGGCGGGgggacggaucGAUCgGGCGc -3' miRNA: 3'- cuuauaGGCCCCGUCU----------UUAGaCCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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