miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 100342 0.66 0.902454
Target:  5'- gGGCCg-CcgCGGGcgAGGCGCaggggCGCGCCCc -3'
miRNA:   3'- -CUGGaaGuaGCCU--UCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 35755 0.66 0.908642
Target:  5'- gGGCCg-----GGGAGGgGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaaguagCCUUCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 38896 0.66 0.902454
Target:  5'- cGCCggUCA--GGggGGCGcucCCGCgACCCg -3'
miRNA:   3'- cUGGa-AGUagCCuuCCGU---GGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18351 0.66 0.914596
Target:  5'- -gUCgaCAUCGGccaccggcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCuu------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 137551 0.66 0.908642
Target:  5'- gGGCCUgggCcgCGGucucGGcCGCCGCGgCCg -3'
miRNA:   3'- -CUGGAa--GuaGCCuu--CC-GUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 112050 0.66 0.908034
Target:  5'- aGAUUUUCGg-GGAGGGC-CCGUccgucgaGCCCg -3'
miRNA:   3'- -CUGGAAGUagCCUUCCGuGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 143092 0.66 0.902454
Target:  5'- cACCUUCguGUCGGccAAGGCguucgacgaguACCGCgagcugACCCa -3'
miRNA:   3'- cUGGAAG--UAGCC--UUCCG-----------UGGCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18124 0.66 0.902454
Target:  5'- cGGCCgcaCGugcUCGGAgaGGGCGgCGC-CCCg -3'
miRNA:   3'- -CUGGaa-GU---AGCCU--UCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 90284 0.66 0.908642
Target:  5'- cGCCUgCAgcgCGGGcgacGGGCGCCuggGCGCCg -3'
miRNA:   3'- cUGGAaGUa--GCCU----UCCGUGG---CGUGGg -5'
21392 3' -55.7 NC_004812.1 + 75149 0.66 0.908642
Target:  5'- cGCCgUCGUCgGGGAGGCccccgAUCGCcugggGCCCu -3'
miRNA:   3'- cUGGaAGUAG-CCUUCCG-----UGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 99602 0.66 0.908034
Target:  5'- aGACCUaCGUguuccagcUGGAgcuccucAGGCGCUGCgACCCc -3'
miRNA:   3'- -CUGGAaGUA--------GCCU-------UCCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 99699 0.66 0.914596
Target:  5'- cGCCgug--CGGc-GGCGCCuGCGCCCa -3'
miRNA:   3'- cUGGaaguaGCCuuCCGUGG-CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 10789 0.66 0.902454
Target:  5'- cGGCCUUCGcUCcGgcGGgGCCGCACg- -3'
miRNA:   3'- -CUGGAAGU-AGcCuuCCgUGGCGUGgg -5'
21392 3' -55.7 NC_004812.1 + 113958 0.66 0.914596
Target:  5'- cGCCUgggauggCGUCGcGggGGCGuuguccuguUCGCugCCg -3'
miRNA:   3'- cUGGAa------GUAGC-CuuCCGU---------GGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 133931 0.66 0.914596
Target:  5'- cGGCCUgccCAUcgCGGAAGaGgACCuCGCCCa -3'
miRNA:   3'- -CUGGAa--GUA--GCCUUC-CgUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 30879 0.66 0.914596
Target:  5'- gGGCCg----CGGGggccgGGGCugCGCgACCCg -3'
miRNA:   3'- -CUGGaaguaGCCU-----UCCGugGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 28648 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 148343 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 114856 0.66 0.920313
Target:  5'- uGAUCUugUC-UUGGgcGcGCACgCGCACCCc -3'
miRNA:   3'- -CUGGA--AGuAGCCuuC-CGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 137794 0.66 0.919752
Target:  5'- gGAUCUggCGggCGGcgAGGGCGCCGCggagcagGCCCc -3'
miRNA:   3'- -CUGGAa-GUa-GCC--UUCCGUGGCG-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.