miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 137877 0.66 0.914596
Target:  5'- cACCUUCGaUGGc--GCGCgGCGCCCc -3'
miRNA:   3'- cUGGAAGUaGCCuucCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 154156 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2936 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 72966 0.66 0.908642
Target:  5'- cGACCUcUCGcaGGgcGGCGuCgGCGCCCc -3'
miRNA:   3'- -CUGGA-AGUagCCuuCCGU-GgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 109590 0.66 0.908642
Target:  5'- uGCCcgUCuAUCGGguGGcCAUgGCGCCCc -3'
miRNA:   3'- cUGGa-AG-UAGCCuuCC-GUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153105 0.66 0.908642
Target:  5'- gGGCCgc---CGGccccGGGC-CCGCGCCCg -3'
miRNA:   3'- -CUGGaaguaGCCu---UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 8422 0.66 0.908642
Target:  5'- cGGCCguac-CGGAGGcCGCCGCcCCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCcGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 100342 0.66 0.902454
Target:  5'- gGGCCg-CcgCGGGcgAGGCGCaggggCGCGCCCc -3'
miRNA:   3'- -CUGGaaGuaGCCU--UCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 24489 0.66 0.899913
Target:  5'- cGGCCgcuccuggaCGGggGGCccCCGCGCCg -3'
miRNA:   3'- -CUGGaagua----GCCuuCCGu-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 40206 0.66 0.902454
Target:  5'- gGGCCcgCAgCGGAucGGCGaccgcCCGCGCCUg -3'
miRNA:   3'- -CUGGaaGUaGCCUu-CCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52159 0.66 0.908642
Target:  5'- uGACCUUgGcgcUCaGcAGGGCGCuCGUGCCCu -3'
miRNA:   3'- -CUGGAAgU---AGcC-UUCCGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 44498 0.66 0.908642
Target:  5'- aGCCcgaCGUCGcGAGGaGgGCCGaCACCCg -3'
miRNA:   3'- cUGGaa-GUAGC-CUUC-CgUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52294 0.66 0.908642
Target:  5'- cGCCgccccCGG-AGGCGCCGUcCCCg -3'
miRNA:   3'- cUGGaaguaGCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 34969 0.67 0.87541
Target:  5'- uGGCCacCAgCGGGAGGCG-CGC-CCCg -3'
miRNA:   3'- -CUGGaaGUaGCCUUCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 11017 0.67 0.888706
Target:  5'- cGCCUgcaccaagacgUCGUCGuuuucGGGCGCCGCcgguggcGCCCg -3'
miRNA:   3'- cUGGA-----------AGUAGCcu---UCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 70934 0.67 0.87541
Target:  5'- gGAUCUgcCGUCGGggG--ACCGCaACCCg -3'
miRNA:   3'- -CUGGAa-GUAGCCuuCcgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 72555 0.67 0.889383
Target:  5'- aACCgcgCcUCgGGggGGCGCCgguguaccgGCGCCCc -3'
miRNA:   3'- cUGGaa-GuAG-CCuuCCGUGG---------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 8218 0.67 0.887344
Target:  5'- gGGCCcgCGUCGGAcgcgcccggcggccGGGCcggggguCCGCcCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCU--------------UCCGu------GGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 17280 0.67 0.871047
Target:  5'- cGCCUUCGugaaaaucUCGGcguGGCucgccgcccucggccGCCGCACCUc -3'
miRNA:   3'- cUGGAAGU--------AGCCuu-CCG---------------UGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.