Results 101 - 120 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21392 | 3' | -55.7 | NC_004812.1 | + | 138466 | 0.67 | 0.889383 |
Target: 5'- gGGCU---GUCGGGgcgGGGCGCCGC-CCUc -3' miRNA: 3'- -CUGGaagUAGCCU---UCCGUGGCGuGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 152358 | 0.67 | 0.889383 |
Target: 5'- cGCCg-CcgCGGcGGGCGCCGcCGCCg -3' miRNA: 3'- cUGGaaGuaGCCuUCCGUGGC-GUGGg -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 137062 | 0.67 | 0.889383 |
Target: 5'- cGGCCUgggCuUCGcGAuc-CACCGCGCCCu -3' miRNA: 3'- -CUGGAa--GuAGC-CUuccGUGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 21353 | 0.67 | 0.894062 |
Target: 5'- aGugCUUgUAUCGGAaccGGGCGuagacgcgcgagcuCCGCGCCg -3' miRNA: 3'- -CugGAA-GUAGCCU---UCCGU--------------GGCGUGGg -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 138139 | 0.67 | 0.896033 |
Target: 5'- gGGCC--CcgCGGGcgcGGgGCCGCGCCCc -3' miRNA: 3'- -CUGGaaGuaGCCUu--CCgUGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 77838 | 0.67 | 0.896033 |
Target: 5'- cGCCaggCGUCc-AGGGCGCCGCGCaCCu -3' miRNA: 3'- cUGGaa-GUAGccUUCCGUGGCGUG-GG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 96814 | 0.67 | 0.87541 |
Target: 5'- aACCcgcgCGUagaGGGugaGGGCGCCGCcCCCa -3' miRNA: 3'- cUGGaa--GUAg--CCU---UCCGUGGCGuGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 73786 | 0.67 | 0.87541 |
Target: 5'- gGGCUccgCGagCGGGgcGGGCGCCGgCGCCCc -3' miRNA: 3'- -CUGGaa-GUa-GCCU--UCCGUGGC-GUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 70934 | 0.67 | 0.87541 |
Target: 5'- gGAUCUgcCGUCGGggG--ACCGCaACCCg -3' miRNA: 3'- -CUGGAa-GUAGCCuuCcgUGGCG-UGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 89752 | 0.67 | 0.896033 |
Target: 5'- cGugCggCAacgaguUCGGggGGCgggucugcACCGCGCuCCg -3' miRNA: 3'- -CugGaaGU------AGCCuuCCG--------UGGCGUG-GG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 100813 | 0.67 | 0.896033 |
Target: 5'- cGugCUggcgCGucUCGGGggcGGGCGCCGCgACgCCg -3' miRNA: 3'- -CugGAa---GU--AGCCU---UCCGUGGCG-UG-GG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 141719 | 0.67 | 0.896033 |
Target: 5'- cAUCguaGUCGGGguggGGuGCACCuGCACCCa -3' miRNA: 3'- cUGGaagUAGCCU----UC-CGUGG-CGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 95526 | 0.67 | 0.868096 |
Target: 5'- cGACCccggCGgggCGGcccGGGGCGUCGCGCCCc -3' miRNA: 3'- -CUGGaa--GUa--GCC---UUCCGUGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 17280 | 0.67 | 0.871047 |
Target: 5'- cGCCUUCGugaaaaucUCGGcguGGCucgccgcccucggccGCCGCACCUc -3' miRNA: 3'- cUGGAAGU--------AGCCuu-CCG---------------UGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 73339 | 0.67 | 0.87541 |
Target: 5'- cGCCgcgC-UCGGAAGGCACaUGCgACCg -3' miRNA: 3'- cUGGaa-GuAGCCUUCCGUG-GCG-UGGg -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 125310 | 0.67 | 0.87541 |
Target: 5'- aGGCCUgcgcgCGUgGGGggcgGGGCGCCGCgggauGCgCCg -3' miRNA: 3'- -CUGGAa----GUAgCCU----UCCGUGGCG-----UG-GG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 1656 | 0.67 | 0.87541 |
Target: 5'- cGCCgcuccccCGUUGGccgcGGCGCCGCgGCCCg -3' miRNA: 3'- cUGGaa-----GUAGCCuu--CCGUGGCG-UGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 25568 | 0.67 | 0.87541 |
Target: 5'- cGCCgggcUCG-CGGAAGacgaaGCGCCGC-CCCg -3' miRNA: 3'- cUGGa---AGUaGCCUUC-----CGUGGCGuGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 34913 | 0.67 | 0.87541 |
Target: 5'- cGGCgUUCA--GGAucaGCGCCGCACCUc -3' miRNA: 3'- -CUGgAAGUagCCUuc-CGUGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 34969 | 0.67 | 0.87541 |
Target: 5'- uGGCCacCAgCGGGAGGCG-CGC-CCCg -3' miRNA: 3'- -CUGGaaGUaGCCUUCCGUgGCGuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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