miRNA display CGI


Results 121 - 140 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 17884 0.67 0.87541
Target:  5'- cGGCCggCA-CGccgcGGGCccGCCGCGCCCg -3'
miRNA:   3'- -CUGGaaGUaGCcu--UCCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 156211 0.67 0.87541
Target:  5'- aGGCCUgcgcgCGUgGGGggcgGGGCGCCGCgggauGCgCCg -3'
miRNA:   3'- -CUGGAa----GUAgCCU----UCCGUGGCG-----UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 130322 0.67 0.868096
Target:  5'- cGACCUUCcccuGUCGccgcGGGGCACCcGCGCggCCg -3'
miRNA:   3'- -CUGGAAG----UAGCc---UUCCGUGG-CGUG--GG- -5'
21392 3' -55.7 NC_004812.1 + 91492 0.67 0.868096
Target:  5'- aGACCgac--CGGcAGGgGCCGCGCCa -3'
miRNA:   3'- -CUGGaaguaGCCuUCCgUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 124721 0.67 0.895378
Target:  5'- cGACCgcgggUGGGAGGCgcuggccggggggACCGC-CCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCCG-------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 87718 0.67 0.882507
Target:  5'- cGACCgcgagCGGGAGGCGgCGCggGCgCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCCGUgGCG--UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 34969 0.67 0.87541
Target:  5'- uGGCCacCAgCGGGAGGCG-CGC-CCCg -3'
miRNA:   3'- -CUGGaaGUaGCCUUCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 34913 0.67 0.87541
Target:  5'- cGGCgUUCA--GGAucaGCGCCGCACCUc -3'
miRNA:   3'- -CUGgAAGUagCCUuc-CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 25568 0.67 0.87541
Target:  5'- cGCCgggcUCG-CGGAAGacgaaGCGCCGC-CCCg -3'
miRNA:   3'- cUGGa---AGUaGCCUUC-----CGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 1656 0.67 0.87541
Target:  5'- cGCCgcuccccCGUUGGccgcGGCGCCGCgGCCCg -3'
miRNA:   3'- cUGGaa-----GUAGCCuu--CCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 125310 0.67 0.87541
Target:  5'- aGGCCUgcgcgCGUgGGGggcgGGGCGCCGCgggauGCgCCg -3'
miRNA:   3'- -CUGGAa----GUAgCCU----UCCGUGGCG-----UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 73339 0.67 0.87541
Target:  5'- cGCCgcgC-UCGGAAGGCACaUGCgACCg -3'
miRNA:   3'- cUGGaa-GuAGCCUUCCGUG-GCG-UGGg -5'
21392 3' -55.7 NC_004812.1 + 17280 0.67 0.871047
Target:  5'- cGCCUUCGugaaaaucUCGGcguGGCucgccgcccucggccGCCGCACCUc -3'
miRNA:   3'- cUGGAAGU--------AGCCuu-CCG---------------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 95526 0.67 0.868096
Target:  5'- cGACCccggCGgggCGGcccGGGGCGUCGCGCCCc -3'
miRNA:   3'- -CUGGaa--GUa--GCC---UUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 89752 0.67 0.896033
Target:  5'- cGugCggCAacgaguUCGGggGGCgggucugcACCGCGCuCCg -3'
miRNA:   3'- -CugGaaGU------AGCCuuCCG--------UGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 52310 0.67 0.867353
Target:  5'- cGGCCggCGUCGGGGugggcGGCACuuaaauaCGCgGCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCUU-----CCGUG-------GCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 141719 0.67 0.896033
Target:  5'- cAUCguaGUCGGGguggGGuGCACCuGCACCCa -3'
miRNA:   3'- cUGGaagUAGCCU----UC-CGUGG-CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 39119 0.67 0.887344
Target:  5'- gGGCCcgCGUCGGAcgcgcccggcggccGGGCcggggguCCGCcCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCU--------------UCCGu------GGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 32557 0.67 0.87541
Target:  5'- cGCCgcuccccCGUUGGccgcGGCGCCGCgGCCCg -3'
miRNA:   3'- cUGGaa-----GUAGCCuu--CCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 81406 0.67 0.889383
Target:  5'- cGGCCgcccugCGGGAGGCGCuCGCGgCa -3'
miRNA:   3'- -CUGGaagua-GCCUUCCGUG-GCGUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.