miRNA display CGI


Results 61 - 80 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 129639 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 69745 0.71 0.707348
Target:  5'- -uCCggCAcCGGggGGCACCaguGCGCUCg -3'
miRNA:   3'- cuGGaaGUaGCCuuCCGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56070 0.71 0.697332
Target:  5'- cGGCgUUCGaCGGc-GGCcucGCCGCGCCCg -3'
miRNA:   3'- -CUGgAAGUaGCCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 4130 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 71026 0.71 0.697332
Target:  5'- gGGCCggCGUCuggagccgcuggGGAGGGCgGCCGC-CCCu -3'
miRNA:   3'- -CUGGaaGUAG------------CCUUCCG-UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 101719 0.71 0.70435
Target:  5'- cGAUCUUgGcCGGggGGCGggcccuggggucccCCGUGCCCg -3'
miRNA:   3'- -CUGGAAgUaGCCuuCCGU--------------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124244 0.71 0.677143
Target:  5'- gGGCCUgg--CGGggGGCGCgCGCggcggcGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCGUG-GCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 124847 0.71 0.666989
Target:  5'- aACUcgguggCGUgGGGcGGGCGCCGCGCCCc -3'
miRNA:   3'- cUGGaa----GUAgCCU-UCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 66652 0.71 0.697332
Target:  5'- aGGCg--CGUCGGGAGGCgcGCCGcCGCUCg -3'
miRNA:   3'- -CUGgaaGUAGCCUUCCG--UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 19144 0.7 0.765798
Target:  5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 154537 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 111391 0.7 0.755343
Target:  5'- uGACg-UCAUCGGcGGGCACgccgucuCGCugCCg -3'
miRNA:   3'- -CUGgaAGUAGCCuUCCGUG-------GCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 59894 0.7 0.736982
Target:  5'- cGGCCcUCGU-GGcccGGCACCGCguGCCCg -3'
miRNA:   3'- -CUGGaAGUAgCCuu-CCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 111968 0.7 0.746691
Target:  5'- cGCCgggGUCGGAgaAGGgGCCGCgGCCCc -3'
miRNA:   3'- cUGGaagUAGCCU--UCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 83844 0.7 0.766741
Target:  5'- cGGCCgUCuccggggggagcggCGGggGGCGgCGCugCCg -3'
miRNA:   3'- -CUGGaAGua------------GCCuuCCGUgGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 98628 0.7 0.765798
Target:  5'- cGGCCgUCG-CGGcc-GCGCUGCGCCCg -3'
miRNA:   3'- -CUGGaAGUaGCCuucCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 111330 0.7 0.756299
Target:  5'- -uCCU--GUCGGggGGuCGCC-CGCCCg -3'
miRNA:   3'- cuGGAagUAGCCuuCC-GUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 112916 0.7 0.756299
Target:  5'- cGCCcUCGcCGcGAAGGCAgCGCgGCCCg -3'
miRNA:   3'- cUGGaAGUaGC-CUUCCGUgGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 91079 0.7 0.765798
Target:  5'- aGACCgggggCGagGGggGGCGCCagggGCGCgCCg -3'
miRNA:   3'- -CUGGaa---GUagCCuuCCGUGG----CGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 84684 0.7 0.756299
Target:  5'- gGACCcgC-UCGGGgccAGGC-CCGCACCg -3'
miRNA:   3'- -CUGGaaGuAGCCU---UCCGuGGCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.