miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 63853 0.7 0.727183
Target:  5'- cGCCg----CGGgcGGC-CCGCGCCCu -3'
miRNA:   3'- cUGGaaguaGCCuuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 29028 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 112916 0.7 0.756299
Target:  5'- cGCCcUCGcCGcGAAGGCAgCGCgGCCCg -3'
miRNA:   3'- cUGGaAGUaGC-CUUCCGUgGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 91079 0.7 0.765798
Target:  5'- aGACCgggggCGagGGggGGCGCCagggGCGCgCCg -3'
miRNA:   3'- -CUGGaa---GUagCCuuCCGUGG----CGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 78278 0.7 0.765798
Target:  5'- cGCCUuccUCAUCGaGAacgGGGC-CCGCACgCa -3'
miRNA:   3'- cUGGA---AGUAGC-CU---UCCGuGGCGUGgG- -5'
21392 3' -55.7 NC_004812.1 + 124173 0.7 0.765798
Target:  5'- uGCCgguaCGUgGGgcGGCugggcgcgGCCGCGCCCg -3'
miRNA:   3'- cUGGaa--GUAgCCuuCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52695 0.7 0.765798
Target:  5'- gGACCUgggCuUCGGGgacGGGC-CCGCGCUg -3'
miRNA:   3'- -CUGGAa--GuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 100479 0.7 0.746691
Target:  5'- uGGCUggCGUCGGgcG--ACCGCGCCCa -3'
miRNA:   3'- -CUGGaaGUAGCCuuCcgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41478 0.7 0.736982
Target:  5'- cGCCcUCGUCaGGGAGucgucGCGCCGUGCCUg -3'
miRNA:   3'- cUGGaAGUAG-CCUUC-----CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 34133 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 83844 0.7 0.766741
Target:  5'- cGGCCgUCuccggggggagcggCGGggGGCGgCGCugCCg -3'
miRNA:   3'- -CUGGaAGua------------GCCuuCCGUgGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 98628 0.7 0.765798
Target:  5'- cGGCCgUCG-CGGcc-GCGCUGCGCCCg -3'
miRNA:   3'- -CUGGaAGUaGCCuucCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 19144 0.7 0.765798
Target:  5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 76932 0.69 0.811338
Target:  5'- -cCCgaaGUCGGGgagcGGGCGCaGCACCCc -3'
miRNA:   3'- cuGGaagUAGCCU----UCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 5727 0.69 0.811338
Target:  5'- uGCCgcgggaGGAGGGCGCCGggcgcCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 76845 0.69 0.793548
Target:  5'- cGCCUgcgcggCGUCGGGcAGGCACgucCACCCc -3'
miRNA:   3'- cUGGAa-----GUAGCCU-UCCGUGgc-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32407 0.69 0.793548
Target:  5'- cGGCCUcgGUCGccgccgcGGGCgcgGCCGCGCCCa -3'
miRNA:   3'- -CUGGAagUAGCcu-----UCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 72197 0.69 0.784432
Target:  5'- gGGCCccgggUCGUCGcGGGGCGuCCGCGgCCu -3'
miRNA:   3'- -CUGGa----AGUAGCcUUCCGU-GGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 56246 0.69 0.793548
Target:  5'- cGACUcgUCcgCGGggGcGCGCCccuGCGCCUc -3'
miRNA:   3'- -CUGGa-AGuaGCCuuC-CGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153752 0.69 0.811338
Target:  5'- cGCCUcgUCGUCGu--GGaCGCCGUGCCCc -3'
miRNA:   3'- cUGGA--AGUAGCcuuCC-GUGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.