miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 49186 0.71 0.697332
Target:  5'- cGCCgcgCGgcCGGuGGGCcugGCCGCACCCg -3'
miRNA:   3'- cUGGaa-GUa-GCCuUCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 66652 0.71 0.697332
Target:  5'- aGGCg--CGUCGGGAGGCgcGCCGcCGCUCg -3'
miRNA:   3'- -CUGgaaGUAGCCUUCCG--UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 71026 0.71 0.697332
Target:  5'- gGGCCggCGUCuggagccgcuggGGAGGGCgGCCGC-CCCu -3'
miRNA:   3'- -CUGGaaGUAG------------CCUUCCG-UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 22900 0.71 0.697332
Target:  5'- cGGCCgaggugCGcGggGGCgugGCCGCGCCCc -3'
miRNA:   3'- -CUGGaagua-GC-CuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56070 0.71 0.697332
Target:  5'- cGGCgUUCGaCGGc-GGCcucGCCGCGCCCg -3'
miRNA:   3'- -CUGgAAGUaGCCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 101719 0.71 0.70435
Target:  5'- cGAUCUUgGcCGGggGGCGggcccuggggucccCCGUGCCCg -3'
miRNA:   3'- -CUGGAAgUaGCCuuCCGU--------------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 4130 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 129639 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 69745 0.71 0.707348
Target:  5'- -uCCggCAcCGGggGGCACCaguGCGCUCg -3'
miRNA:   3'- cuGGaaGUaGCCuuCCGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 154537 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 29028 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 51588 0.7 0.721264
Target:  5'- cGCCgggUCAgUCGGcaccgcggggcgcgaGGGGCGCCGCggcgGCCCg -3'
miRNA:   3'- cUGGa--AGU-AGCC---------------UUCCGUGGCG----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 31394 0.7 0.725213
Target:  5'- uGACgUUCucgagcaggacCGGcAGGCGCCGCGCCa -3'
miRNA:   3'- -CUGgAAGua---------GCCuUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 63853 0.7 0.727183
Target:  5'- cGCCg----CGGgcGGC-CCGCGCCCu -3'
miRNA:   3'- cUGGaaguaGCCuuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 68181 0.7 0.727183
Target:  5'- cGGCCgcgggCGGggGcGCGCCGgaCGCCCg -3'
miRNA:   3'- -CUGGaaguaGCCuuC-CGUGGC--GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3232 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 34133 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41478 0.7 0.736982
Target:  5'- cGCCcUCGUCaGGGAGucgucGCGCCGUGCCUg -3'
miRNA:   3'- cUGGaAGUAG-CCUUC-----CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 59894 0.7 0.736982
Target:  5'- cGGCCcUCGU-GGcccGGCACCGCguGCCCg -3'
miRNA:   3'- -CUGGaAGUAgCCuu-CCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 111968 0.7 0.746691
Target:  5'- cGCCgggGUCGGAgaAGGgGCCGCgGCCCc -3'
miRNA:   3'- cUGGaagUAGCCU--UCCgUGGCG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.