miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 111968 0.7 0.746691
Target:  5'- cGCCgggGUCGGAgaAGGgGCCGCgGCCCc -3'
miRNA:   3'- cUGGaagUAGCCU--UCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 100479 0.7 0.746691
Target:  5'- uGGCUggCGUCGGgcG--ACCGCGCCCa -3'
miRNA:   3'- -CUGGaaGUAGCCuuCcgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 111391 0.7 0.755343
Target:  5'- uGACg-UCAUCGGcGGGCACgccgucuCGCugCCg -3'
miRNA:   3'- -CUGgaAGUAGCCuUCCGUG-------GCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 112916 0.7 0.756299
Target:  5'- cGCCcUCGcCGcGAAGGCAgCGCgGCCCg -3'
miRNA:   3'- cUGGaAGUaGC-CUUCCGUgGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 84684 0.7 0.756299
Target:  5'- gGACCcgC-UCGGGgccAGGC-CCGCACCg -3'
miRNA:   3'- -CUGGaaGuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 111330 0.7 0.756299
Target:  5'- -uCCU--GUCGGggGGuCGCC-CGCCCg -3'
miRNA:   3'- cuGGAagUAGCCuuCC-GUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 91079 0.7 0.765798
Target:  5'- aGACCgggggCGagGGggGGCGCCagggGCGCgCCg -3'
miRNA:   3'- -CUGGaa---GUagCCuuCCGUGG----CGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 19144 0.7 0.765798
Target:  5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 98628 0.7 0.765798
Target:  5'- cGGCCgUCG-CGGcc-GCGCUGCGCCCg -3'
miRNA:   3'- -CUGGaAGUaGCCuucCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124173 0.7 0.765798
Target:  5'- uGCCgguaCGUgGGgcGGCugggcgcgGCCGCGCCCg -3'
miRNA:   3'- cUGGaa--GUAgCCuuCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52695 0.7 0.765798
Target:  5'- gGACCUgggCuUCGGGgacGGGC-CCGCGCUg -3'
miRNA:   3'- -CUGGAa--GuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 78278 0.7 0.765798
Target:  5'- cGCCUuccUCAUCGaGAacgGGGC-CCGCACgCa -3'
miRNA:   3'- cUGGA---AGUAGC-CU---UCCGuGGCGUGgG- -5'
21392 3' -55.7 NC_004812.1 + 83844 0.7 0.766741
Target:  5'- cGGCCgUCuccggggggagcggCGGggGGCGgCGCugCCg -3'
miRNA:   3'- -CUGGaAGua------------GCCuuCCGUgGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 116449 0.69 0.771441
Target:  5'- uACCUUUugucccccggaGGggGGCGCCGgcCACCCc -3'
miRNA:   3'- cUGGAAGuag--------CCuuCCGUGGC--GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 77256 0.69 0.774246
Target:  5'- uGCCcUCG-CGG-GGGCGCCGCuggcgcuGCCCg -3'
miRNA:   3'- cUGGaAGUaGCCuUCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 122185 0.69 0.775178
Target:  5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 105410 0.69 0.775178
Target:  5'- uGCCggcgcUCggCGGGGcccGGCGcCCGCGCCCg -3'
miRNA:   3'- cUGGa----AGuaGCCUU---CCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153086 0.69 0.775178
Target:  5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 72494 0.69 0.775178
Target:  5'- cGCCUcgggGUCGGggGGCgcGCCGcCGCCg -3'
miRNA:   3'- cUGGAag--UAGCCuuCCG--UGGC-GUGGg -5'
21392 3' -55.7 NC_004812.1 + 117664 0.69 0.778896
Target:  5'- cGGCCgggCGcCGGggGGUGCCggcggaggccggcccGCGCCCc -3'
miRNA:   3'- -CUGGaa-GUaGCCuuCCGUGG---------------CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.