miRNA display CGI


Results 101 - 120 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 148565 0.69 0.778896
Target:  5'- cGGCCgggCGcCGGggGGUGCCggcggaggccggcccGCGCCCc -3'
miRNA:   3'- -CUGGaa-GUaGCCuuCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 31319 0.69 0.783512
Target:  5'- aGGCCUUCcgCGcgcGGCGCucucgcgCGCGCCCg -3'
miRNA:   3'- -CUGGAAGuaGCcuuCCGUG-------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 18443 0.69 0.783512
Target:  5'- gGGCCg-CGUCcgguggcgcggcgGGggGGCGcggccCCGCGCCCg -3'
miRNA:   3'- -CUGGaaGUAG-------------CCuuCCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 97624 0.69 0.783512
Target:  5'- uGACgaUCGcgcucUCGGAcGGCGCCGCcaucucgGCCCc -3'
miRNA:   3'- -CUGgaAGU-----AGCCUuCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 55000 0.69 0.783512
Target:  5'- cGACCguaGUCGGGGcGGCGcagcucgacuucuCCGCACCg -3'
miRNA:   3'- -CUGGaagUAGCCUU-CCGU-------------GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 418 0.69 0.783512
Target:  5'- aGGCCUUCcgCGcgcGGCGCucucgcgCGCGCCCg -3'
miRNA:   3'- -CUGGAAGuaGCcuuCCGUG-------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 94260 0.69 0.784432
Target:  5'- cGACCcacgcgCcgCGGgcGcGCGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaa----GuaGCCuuC-CGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 151551 0.69 0.784432
Target:  5'- gGGCCggggcCGG-GGGCGCgGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 72197 0.69 0.784432
Target:  5'- gGGCCccgggUCGUCGcGGGGCGuCCGCGgCCu -3'
miRNA:   3'- -CUGGa----AGUAGCcUUCCGU-GGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 60456 0.69 0.784432
Target:  5'- cGCCcUCGaaccagCGGAAGGCGgCGCggucGCCCg -3'
miRNA:   3'- cUGGaAGUa-----GCCUUCCGUgGCG----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18710 0.69 0.784432
Target:  5'- aGCCgcaguagcUCcgCGGcgcuGGGGCGCCGCGCgCCa -3'
miRNA:   3'- cUGGa-------AGuaGCC----UUCCGUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 152640 0.69 0.784432
Target:  5'- gGGCCggcgcgCGgcgGGggGGCGCCGgGCCUc -3'
miRNA:   3'- -CUGGaa----GUag-CCuuCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 26042 0.69 0.784432
Target:  5'- gGGCCggggcCGG-GGGCGCgGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56246 0.69 0.793548
Target:  5'- cGACUcgUCcgCGGggGcGCGCCccuGCGCCUc -3'
miRNA:   3'- -CUGGa-AGuaGCCuuC-CGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 76845 0.69 0.793548
Target:  5'- cGCCUgcgcggCGUCGGGcAGGCACgucCACCCc -3'
miRNA:   3'- cUGGAa-----GUAGCCU-UCCGUGgc-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 83192 0.69 0.793548
Target:  5'- aGCUcgCggCGGGAGGCgcggcgGCCGCGCUCg -3'
miRNA:   3'- cUGGaaGuaGCCUUCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32407 0.69 0.793548
Target:  5'- cGGCCUcgGUCGccgccgcGGGCgcgGCCGCGCCCa -3'
miRNA:   3'- -CUGGAagUAGCcu-----UCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 5727 0.69 0.811338
Target:  5'- uGCCgcgggaGGAGGGCGCCGggcgcCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153752 0.69 0.811338
Target:  5'- cGCCUcgUCGUCGu--GGaCGCCGUGCCCc -3'
miRNA:   3'- cUGGA--AGUAGCcuuCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 76932 0.69 0.811338
Target:  5'- -cCCgaaGUCGGGgagcGGGCGCaGCACCCc -3'
miRNA:   3'- cuGGaagUAGCCU----UCCGUGgCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.