miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 126207 0.66 0.902454
Target:  5'- cGGCCUccUCGgcgCGGcagcccGGGCGCCGgcccCGCCCc -3'
miRNA:   3'- -CUGGA--AGUa--GCCu-----UCCGUGGC----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 122044 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 109702 0.66 0.902454
Target:  5'- cGCCgcgg-CGGc-GGcCGCCGCGCCCg -3'
miRNA:   3'- cUGGaaguaGCCuuCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 40206 0.66 0.902454
Target:  5'- gGGCCcgCAgCGGAucGGCGaccgcCCGCGCCUg -3'
miRNA:   3'- -CUGGaaGUaGCCUu-CCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 100904 0.66 0.902454
Target:  5'- cGCCgagCG-CGGGugcAGGCG-CGCGCCCa -3'
miRNA:   3'- cUGGaa-GUaGCCU---UCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 152945 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143092 0.66 0.902454
Target:  5'- cACCUUCguGUCGGccAAGGCguucgacgaguACCGCgagcugACCCa -3'
miRNA:   3'- cUGGAAG--UAGCC--UUCCG-----------UGGCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 10789 0.66 0.902454
Target:  5'- cGGCCUUCGcUCcGgcGGgGCCGCACg- -3'
miRNA:   3'- -CUGGAAGU-AGcCuuCCgUGGCGUGgg -5'
21392 3' -55.7 NC_004812.1 + 38896 0.66 0.902454
Target:  5'- cGCCggUCA--GGggGGCGcucCCGCgACCCg -3'
miRNA:   3'- cUGGa-AGUagCCuuCCGU---GGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18124 0.66 0.902454
Target:  5'- cGGCCgcaCGugcUCGGAgaGGGCGgCGC-CCCg -3'
miRNA:   3'- -CUGGaa-GU---AGCCU--UCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 100342 0.66 0.902454
Target:  5'- gGGCCg-CcgCGGGcgAGGCGCaggggCGCGCCCc -3'
miRNA:   3'- -CUGGaaGuaGCCU--UCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 699 0.66 0.902454
Target:  5'- cGGCCUccUCGgcgCGGcagcccGGGCGCCGgcccCGCCCc -3'
miRNA:   3'- -CUGGA--AGUa--GCCu-----UCCGUGGC----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 70058 0.66 0.900552
Target:  5'- cGACCgccgCGUCGGAAucugugcucgucauGGCaAUCGCGguCCCa -3'
miRNA:   3'- -CUGGaa--GUAGCCUU--------------CCG-UGGCGU--GGG- -5'
21392 3' -55.7 NC_004812.1 + 24489 0.66 0.899913
Target:  5'- cGGCCgcuccuggaCGGggGGCccCCGCGCCg -3'
miRNA:   3'- -CUGGaagua----GCCuuCCGu-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 141719 0.67 0.896033
Target:  5'- cAUCguaGUCGGGguggGGuGCACCuGCACCCa -3'
miRNA:   3'- cUGGaagUAGCCU----UC-CGUGG-CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 100813 0.67 0.896033
Target:  5'- cGugCUggcgCGucUCGGGggcGGGCGCCGCgACgCCg -3'
miRNA:   3'- -CugGAa---GU--AGCCU---UCCGUGGCG-UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 77838 0.67 0.896033
Target:  5'- cGCCaggCGUCc-AGGGCGCCGCGCaCCu -3'
miRNA:   3'- cUGGaa-GUAGccUUCCGUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 61963 0.67 0.896033
Target:  5'- cGGCCgcCGcCaGAgAGGCGcCCGCGCCCg -3'
miRNA:   3'- -CUGGaaGUaGcCU-UCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 138139 0.67 0.896033
Target:  5'- gGGCC--CcgCGGGcgcGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGuaGCCUu--CCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 89752 0.67 0.896033
Target:  5'- cGugCggCAacgaguUCGGggGGCgggucugcACCGCGCuCCg -3'
miRNA:   3'- -CugGaaGU------AGCCuuCCG--------UGGCGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.