miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 31394 0.7 0.725213
Target:  5'- uGACgUUCucgagcaggacCGGcAGGCGCCGCGCCa -3'
miRNA:   3'- -CUGgAAGua---------GCCuUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 31736 0.71 0.666989
Target:  5'- cGGCCgagaggCG-CGGGgcggGGGCGCgGCGCCCg -3'
miRNA:   3'- -CUGGaa----GUaGCCU----UCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32056 0.68 0.85284
Target:  5'- uGACCgccucggcgUCGUCGcGGGGC-CCGUgggGCCCg -3'
miRNA:   3'- -CUGGa--------AGUAGCcUUCCGuGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 32407 0.69 0.793548
Target:  5'- cGGCCUcgGUCGccgccgcGGGCgcgGCCGCGCCCa -3'
miRNA:   3'- -CUGGAagUAGCcu-----UCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32557 0.67 0.87541
Target:  5'- cGCCgcuccccCGUUGGccgcGGCGCCGCgGCCCg -3'
miRNA:   3'- cUGGaa-----GUAGCCuu--CCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 32655 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 32771 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 33837 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 34133 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 34913 0.67 0.87541
Target:  5'- cGGCgUUCA--GGAucaGCGCCGCACCUc -3'
miRNA:   3'- -CUGgAAGUagCCUuc-CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 34969 0.67 0.87541
Target:  5'- uGGCCacCAgCGGGAGGCG-CGC-CCCg -3'
miRNA:   3'- -CUGGaaGUaGCCUUCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 35755 0.66 0.908642
Target:  5'- gGGCCg-----GGGAGGgGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaaguagCCUUCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 36450 0.74 0.525442
Target:  5'- cGGCCgcgUUGUCgaggagcgGGggGGCcCCGCGCCCc -3'
miRNA:   3'- -CUGGa--AGUAG--------CCuuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 36628 0.69 0.811338
Target:  5'- uGCCgcgggaGGAGGGCGCCGggcgcCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 37802 0.67 0.882507
Target:  5'- uGugUgguggUC-UCGGGGcGCGCUGCGCCCg -3'
miRNA:   3'- -CugGa----AGuAGCCUUcCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 38896 0.66 0.902454
Target:  5'- cGCCggUCA--GGggGGCGcucCCGCgACCCg -3'
miRNA:   3'- cUGGa-AGUagCCuuCCGU---GGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 39119 0.67 0.887344
Target:  5'- gGGCCcgCGUCGGAcgcgcccggcggccGGGCcggggguCCGCcCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCU--------------UCCGu------GGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 39321 0.66 0.925792
Target:  5'- cGugCagCAUCuGGucGGCcguGCCGCGCUCg -3'
miRNA:   3'- -CugGaaGUAG-CCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 39323 0.66 0.908642
Target:  5'- cGGCCguac-CGGAGGcCGCCGCcCCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCcGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 40206 0.66 0.902454
Target:  5'- gGGCCcgCAgCGGAucGGCGaccgcCCGCGCCUg -3'
miRNA:   3'- -CUGGaaGUaGCCUu-CCGU-----GGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.