miRNA display CGI


Results 81 - 100 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 41243 0.8 0.25777
Target:  5'- cGCCUUCGUCuGucGGCGCCGCGuCCCc -3'
miRNA:   3'- cUGGAAGUAGcCuuCCGUGGCGU-GGG- -5'
21392 3' -55.7 NC_004812.1 + 41414 0.66 0.904957
Target:  5'- cGCCUacuUCGUgugCGGggGGUgcguuuacuccgucuGCCGCcCCCg -3'
miRNA:   3'- cUGGA---AGUA---GCCuuCCG---------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 41478 0.7 0.736982
Target:  5'- cGCCcUCGUCaGGGAGucgucGCGCCGUGCCUg -3'
miRNA:   3'- cUGGaAGUAG-CCUUC-----CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 42013 0.68 0.860571
Target:  5'- cGCCgggUCGauggCGGggGcGCGCgGCGCCa -3'
miRNA:   3'- cUGGa--AGUa---GCCuuC-CGUGgCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 42441 0.78 0.318011
Target:  5'- -cCCUUCcuccggCGGAAGGCcgGCCGCAUCCa -3'
miRNA:   3'- cuGGAAGua----GCCUUCCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 44046 0.71 0.684229
Target:  5'- cACCUgcgCGUCGGAcGGcGCGCCcccccgcucggcggGCGCCCg -3'
miRNA:   3'- cUGGAa--GUAGCCU-UC-CGUGG--------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 44498 0.66 0.908642
Target:  5'- aGCCcgaCGUCGcGAGGaGgGCCGaCACCCg -3'
miRNA:   3'- cUGGaa-GUAGC-CUUC-CgUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 46536 0.66 0.930004
Target:  5'- gGGCCUcuccguacucccCGUCGGGcccgagccccGGGuCGCCGCGCaCCg -3'
miRNA:   3'- -CUGGAa-----------GUAGCCU----------UCC-GUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 47204 0.66 0.914596
Target:  5'- gGACCU------GggGGCGCgGCGCCCc -3'
miRNA:   3'- -CUGGAaguagcCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 48184 0.68 0.84491
Target:  5'- uGGCCUcggCGUCG--AGGguCCGCGCCa -3'
miRNA:   3'- -CUGGAa--GUAGCcuUCCguGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 48260 0.66 0.925792
Target:  5'- gGACCgggUCA-CGG-GGGCGCUGgagGCCCu -3'
miRNA:   3'- -CUGGa--AGUaGCCuUCCGUGGCg--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 49015 0.66 0.925792
Target:  5'- cGGCCgggccCAcgCGGAcgAGGUcaACCGCGCCg -3'
miRNA:   3'- -CUGGaa---GUa-GCCU--UCCG--UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 49186 0.71 0.697332
Target:  5'- cGCCgcgCGgcCGGuGGGCcugGCCGCACCCg -3'
miRNA:   3'- cUGGaa-GUa-GCCuUCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 49524 0.73 0.585432
Target:  5'- cGACCccCGUCGGcGAGGuCAUCGCcGCCCa -3'
miRNA:   3'- -CUGGaaGUAGCC-UUCC-GUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 49686 0.67 0.880401
Target:  5'- gGACg-UUGUCGGggGGCACCcaggggagcgcgucGgACCCc -3'
miRNA:   3'- -CUGgaAGUAGCCuuCCGUGG--------------CgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 50073 0.67 0.882507
Target:  5'- -cCCggCGUaCGugacGAAGGCGCCGCGgCCg -3'
miRNA:   3'- cuGGaaGUA-GC----CUUCCGUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 50471 0.66 0.906195
Target:  5'- cGGCCU-CggCGGGcgcguguggacgccGGGCGCCGaggcgcuCACCCg -3'
miRNA:   3'- -CUGGAaGuaGCCU--------------UCCGUGGC-------GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 51179 0.68 0.836788
Target:  5'- -cCCgacUCGggCGGGcgcGGGCGCCGgGCCCc -3'
miRNA:   3'- cuGGa--AGUa-GCCU---UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 51382 0.68 0.817415
Target:  5'- cGCCcagCAgUGGGAGGCGCCGgccgccggcgcgcuCGCCCa -3'
miRNA:   3'- cUGGaa-GUaGCCUUCCGUGGC--------------GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 51517 0.73 0.595586
Target:  5'- cGGCuCUUCGUCGGAGGaCGa-GCGCCCg -3'
miRNA:   3'- -CUG-GAAGUAGCCUUCcGUggCGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.