miRNA display CGI


Results 101 - 120 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 51588 0.7 0.721264
Target:  5'- cGCCgggUCAgUCGGcaccgcggggcgcgaGGGGCGCCGCggcgGCCCg -3'
miRNA:   3'- cUGGa--AGU-AGCC---------------UUCCGUGGCG----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 52159 0.66 0.908642
Target:  5'- uGACCUUgGcgcUCaGcAGGGCGCuCGUGCCCu -3'
miRNA:   3'- -CUGGAAgU---AGcC-UUCCGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52294 0.66 0.908642
Target:  5'- cGCCgccccCGG-AGGCGCCGUcCCCg -3'
miRNA:   3'- cUGGaaguaGCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 52310 0.67 0.867353
Target:  5'- cGGCCggCGUCGGGGugggcGGCACuuaaauaCGCgGCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCUU-----CCGUG-------GCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 52378 0.68 0.836788
Target:  5'- gGGCCUUCAUgGGGuuGCGCUGCAg-- -3'
miRNA:   3'- -CUGGAAGUAgCCUucCGUGGCGUggg -5'
21392 3' -55.7 NC_004812.1 + 52695 0.7 0.765798
Target:  5'- gGACCUgggCuUCGGGgacGGGC-CCGCGCUg -3'
miRNA:   3'- -CUGGAa--GuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 53327 0.73 0.54522
Target:  5'- cACCgUCAgcgugCGGggGGCgGCCGuCGCCCc -3'
miRNA:   3'- cUGGaAGUa----GCCuuCCG-UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 53525 0.66 0.920313
Target:  5'- gGACgCguauUCGGAGGGCuCCGgAUCCg -3'
miRNA:   3'- -CUG-GaaguAGCCUUCCGuGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 53782 0.71 0.656808
Target:  5'- cGCCggCGU-GGAGGcGCGCCGC-CCCg -3'
miRNA:   3'- cUGGaaGUAgCCUUC-CGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 54157 0.68 0.85284
Target:  5'- -cCCggCggCGGGAcacGUACCGCGCCCg -3'
miRNA:   3'- cuGGaaGuaGCCUUc--CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 54789 0.68 0.860571
Target:  5'- cGACCUag--CGG-GGGCGCCGCGguUCCu -3'
miRNA:   3'- -CUGGAaguaGCCuUCCGUGGCGU--GGG- -5'
21392 3' -55.7 NC_004812.1 + 55000 0.69 0.783512
Target:  5'- cGACCguaGUCGGGGcGGCGcagcucgacuucuCCGCACCg -3'
miRNA:   3'- -CUGGaagUAGCCUU-CCGU-------------GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 55377 0.68 0.860571
Target:  5'- cGGCCcgUCga-GGccGGCGCgGCGCCCc -3'
miRNA:   3'- -CUGGa-AGuagCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55457 0.66 0.920313
Target:  5'- cGGCCgUCAggUCGcaGAAGcGCACgCGCGCCg -3'
miRNA:   3'- -CUGGaAGU--AGC--CUUC-CGUG-GCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 55686 0.67 0.87541
Target:  5'- uGGCUgUCGguggCGGuGGGCGCgcgccUGCACCCg -3'
miRNA:   3'- -CUGGaAGUa---GCCuUCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55720 0.66 0.925792
Target:  5'- cGCCccgCcUCGGggGcCGCgGCGCCCu -3'
miRNA:   3'- cUGGaa-GuAGCCuuCcGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56070 0.71 0.697332
Target:  5'- cGGCgUUCGaCGGc-GGCcucGCCGCGCCCg -3'
miRNA:   3'- -CUGgAAGUaGCCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56218 0.66 0.925792
Target:  5'- cGACCUcCGgcCGGu-GGCcUCGCGCCCc -3'
miRNA:   3'- -CUGGAaGUa-GCCuuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56246 0.69 0.793548
Target:  5'- cGACUcgUCcgCGGggGcGCGCCccuGCGCCUc -3'
miRNA:   3'- -CUGGa-AGuaGCCuuC-CGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 59894 0.7 0.736982
Target:  5'- cGGCCcUCGU-GGcccGGCACCGCguGCCCg -3'
miRNA:   3'- -CUGGaAGUAgCCuu-CCGUGGCG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.