miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 138267 0.72 0.605766
Target:  5'- cGGCCg----CGGucGcGCGCCGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuuC-CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 138139 0.67 0.896033
Target:  5'- gGGCC--CcgCGGGcgcGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGuaGCCUu--CCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 138135 0.69 0.811338
Target:  5'- cGCCccUCGUCcuGGAGGGCACguacaCGCACgCCg -3'
miRNA:   3'- cUGGa-AGUAG--CCUUCCGUG-----GCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 137877 0.66 0.914596
Target:  5'- cACCUUCGaUGGc--GCGCgGCGCCCc -3'
miRNA:   3'- cUGGAAGUaGCCuucCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 137794 0.66 0.919752
Target:  5'- gGAUCUggCGggCGGcgAGGGCGCCGCggagcagGCCCc -3'
miRNA:   3'- -CUGGAa-GUa-GCC--UUCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 137551 0.66 0.908642
Target:  5'- gGGCCUgggCcgCGGucucGGcCGCCGCGgCCg -3'
miRNA:   3'- -CUGGAa--GuaGCCuu--CC-GUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 137094 0.68 0.834315
Target:  5'- cGCCgggC-UCGGAAGGCugCGUcuucgagugcagccACCCc -3'
miRNA:   3'- cUGGaa-GuAGCCUUCCGugGCG--------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 137062 0.67 0.889383
Target:  5'- cGGCCUgggCuUCGcGAuc-CACCGCGCCCu -3'
miRNA:   3'- -CUGGAa--GuAGC-CUuccGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 136904 0.68 0.860571
Target:  5'- cGGCCg--GUCGcc-GGCGCCGCGCgCCg -3'
miRNA:   3'- -CUGGaagUAGCcuuCCGUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 136597 0.66 0.925792
Target:  5'- uGCCgcgacgCGcgCGGAGacGGCGCCGCGCgCu -3'
miRNA:   3'- cUGGaa----GUa-GCCUU--CCGUGGCGUGgG- -5'
21392 3' -55.7 NC_004812.1 + 136257 0.66 0.908642
Target:  5'- cGACUUUg--CGGAGGcGCGCuuucgccugcgCGCGCCCg -3'
miRNA:   3'- -CUGGAAguaGCCUUC-CGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 135843 0.68 0.85284
Target:  5'- gGACUcggCGUCGGggGGCucggagggcaACUucaGCGCCCc -3'
miRNA:   3'- -CUGGaa-GUAGCCuuCCG----------UGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 134608 0.66 0.925792
Target:  5'- uGCCcgggUUC-UCGGA--GCGCCGCugCCu -3'
miRNA:   3'- cUGG----AAGuAGCCUucCGUGGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 133931 0.66 0.914596
Target:  5'- cGGCCUgccCAUcgCGGAAGaGgACCuCGCCCa -3'
miRNA:   3'- -CUGGAa--GUA--GCCUUC-CgUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 131694 1.11 0.002308
Target:  5'- uGACCUUCAUCGGAAGGCACCGCACCCu -3'
miRNA:   3'- -CUGGAAGUAGCCUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 130733 0.66 0.914596
Target:  5'- cGCCg----CGGAGGGCcgGCCGCcgccaACCCc -3'
miRNA:   3'- cUGGaaguaGCCUUCCG--UGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 130550 0.79 0.2703
Target:  5'- gGGCCgggggCG-CGcGAGGGCGCCGCGCCCc -3'
miRNA:   3'- -CUGGaa---GUaGC-CUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 130335 0.68 0.860571
Target:  5'- aGGCC-UCGUCGGcguccaGGGGCACgGC-CCg -3'
miRNA:   3'- -CUGGaAGUAGCC------UUCCGUGgCGuGGg -5'
21392 3' -55.7 NC_004812.1 + 130322 0.67 0.868096
Target:  5'- cGACCUUCcccuGUCGccgcGGGGCACCcGCGCggCCg -3'
miRNA:   3'- -CUGGAAG----UAGCc---UUCCGUGG-CGUG--GG- -5'
21392 3' -55.7 NC_004812.1 + 129639 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.