miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 129235 0.67 0.889383
Target:  5'- gGACCUggggcgguaCAUCGGccaccuGGCuggGCCGCGCgCCg -3'
miRNA:   3'- -CUGGAa--------GUAGCCuu----CCG---UGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 128893 0.68 0.836788
Target:  5'- aGGCCUcgagggCGgcggCGGAGGGCGCCgGCguguggcuggGCCCc -3'
miRNA:   3'- -CUGGAa-----GUa---GCCUUCCGUGG-CG----------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 128678 0.71 0.68726
Target:  5'- uGGCCggcggUCuucCGGGAGGCGggGCGCCCg -3'
miRNA:   3'- -CUGGa----AGua-GCCUUCCGUggCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 128349 0.74 0.535299
Target:  5'- cGGCCacUCcUCGGggGGCACgGCGUCCa -3'
miRNA:   3'- -CUGGa-AGuAGCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 127546 0.74 0.496306
Target:  5'- gGGCCUcggUCGgcggCGGggGGCGCgggggagggggCGCGCCCc -3'
miRNA:   3'- -CUGGA---AGUa---GCCuuCCGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 127306 0.68 0.82848
Target:  5'- cGCgUgCAUCGGGccccGGCugCGCGCCUc -3'
miRNA:   3'- cUGgAaGUAGCCUu---CCGugGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126512 0.72 0.626177
Target:  5'- aGGCCUgcc-CGGccGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126207 0.66 0.902454
Target:  5'- cGGCCUccUCGgcgCGGcagcccGGGCGCCGgcccCGCCCc -3'
miRNA:   3'- -CUGGA--AGUa--GCCu-----UCCGUGGC----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126199 0.8 0.251685
Target:  5'- uGACCUUCA-CGugccuGAAGGcCGCCGCGCCCc -3'
miRNA:   3'- -CUGGAAGUaGC-----CUUCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 125310 0.67 0.87541
Target:  5'- aGGCCUgcgcgCGUgGGGggcgGGGCGCCGCgggauGCgCCg -3'
miRNA:   3'- -CUGGAa----GUAgCCU----UCCGUGGCG-----UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 124920 0.68 0.819994
Target:  5'- aGGCCUgCGcCGGcGAGGacgaGCUGCGCCCc -3'
miRNA:   3'- -CUGGAaGUaGCC-UUCCg---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124847 0.71 0.666989
Target:  5'- aACUcgguggCGUgGGGcGGGCGCCGCGCCCc -3'
miRNA:   3'- cUGGaa----GUAgCCU-UCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124721 0.67 0.895378
Target:  5'- cGACCgcgggUGGGAGGCgcuggccggggggACCGC-CCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCCG-------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 124368 0.68 0.82848
Target:  5'- cGGCCUUCcggCGGAccGC-CCGCggaccGCCCg -3'
miRNA:   3'- -CUGGAAGua-GCCUucCGuGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 124244 0.71 0.677143
Target:  5'- gGGCCUgg--CGGggGGCGCgCGCggcggcGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCGUG-GCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 124173 0.7 0.765798
Target:  5'- uGCCgguaCGUgGGgcGGCugggcgcgGCCGCGCCCg -3'
miRNA:   3'- cUGGaa--GUAgCCuuCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124036 0.67 0.889383
Target:  5'- cGGCCgcccugcgCGUgugcUGGggGGCcgcggccaGCUGCGCCCg -3'
miRNA:   3'- -CUGGaa------GUA----GCCuuCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124034 0.66 0.931033
Target:  5'- cGCCgcgggCGGGccgcGGCGCCGCGgCCa -3'
miRNA:   3'- cUGGaaguaGCCUu---CCGUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 122185 0.69 0.775178
Target:  5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 122044 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.