miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 121739 0.75 0.458647
Target:  5'- gGGCCggcgcgCggCGGggGGCGCCGgGCCUc -3'
miRNA:   3'- -CUGGaa----GuaGCCuuCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 121242 0.66 0.914596
Target:  5'- -uCCUUUgccaCGGggGGCGUCGC-CCCg -3'
miRNA:   3'- cuGGAAGua--GCCuuCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 119863 0.66 0.925792
Target:  5'- uACCacCAgcugCGGAcGGGC-CUGCACCCc -3'
miRNA:   3'- cUGGaaGUa---GCCU-UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119400 0.66 0.914596
Target:  5'- gGGCCccccgCGUgccCGG-GGGCGCCGCuCCCc -3'
miRNA:   3'- -CUGGaa---GUA---GCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 119398 0.71 0.677143
Target:  5'- cGGCCgcgUCGUCGuGGAcGGCcCCGCGCUg -3'
miRNA:   3'- -CUGGa--AGUAGC-CUU-CCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 119344 0.66 0.914596
Target:  5'- uGCCcgCGUCccuGGcGGGCGgCGCGCCUg -3'
miRNA:   3'- cUGGaaGUAG---CCuUCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 118925 0.68 0.82848
Target:  5'- cACCUgaugCGGGAcgcGGCGCUGCugCCc -3'
miRNA:   3'- cUGGAaguaGCCUU---CCGUGGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 118391 0.68 0.863606
Target:  5'- cGCCUUCGacuucuUCGuGggGGUcgcggauguggaccuGCCGgGCCCg -3'
miRNA:   3'- cUGGAAGU------AGC-CuuCCG---------------UGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 118002 0.68 0.836788
Target:  5'- aGACCcccgCcgCGGAcucGGCGcgacccCCGCGCCCg -3'
miRNA:   3'- -CUGGaa--GuaGCCUu--CCGU------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117664 0.69 0.778896
Target:  5'- cGGCCgggCGcCGGggGGUGCCggcggaggccggcccGCGCCCc -3'
miRNA:   3'- -CUGGaa-GUaGCCuuCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117442 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117352 0.72 0.605766
Target:  5'- cGGCCgccgacgCGGuGGGGCgGCCGCGCCCg -3'
miRNA:   3'- -CUGGaagua--GCC-UUCCG-UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117294 0.68 0.819994
Target:  5'- cGGCCUcCGguaCGGccGGGGCcgagcccccGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaGUa--GCC--UUCCG---------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117113 0.66 0.925792
Target:  5'- uGACCaagcUCAUCGac---CGCCGCACCCu -3'
miRNA:   3'- -CUGGa---AGUAGCcuuccGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 117056 0.69 0.811338
Target:  5'- aGCCgcUCAUCGcccgcGAcGGC-CCGCACCCc -3'
miRNA:   3'- cUGGa-AGUAGC-----CUuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 116778 0.66 0.927917
Target:  5'- gGGCUUUUAUCuccuGGcaaccggccccaagcAGGGCACCGUGCCa -3'
miRNA:   3'- -CUGGAAGUAG----CC---------------UUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 116449 0.69 0.771441
Target:  5'- uACCUUUugucccccggaGGggGGCGCCGgcCACCCc -3'
miRNA:   3'- cUGGAAGuag--------CCuuCCGUGGC--GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 116160 0.68 0.84491
Target:  5'- gGGCCgcggcgcggCAUCGGuaugccGGgGCCGCGCCa -3'
miRNA:   3'- -CUGGaa-------GUAGCCuu----CCgUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 114856 0.66 0.920313
Target:  5'- uGAUCUugUC-UUGGgcGcGCACgCGCACCCc -3'
miRNA:   3'- -CUGGA--AGuAGCCuuC-CGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 114172 0.66 0.920313
Target:  5'- cGGCCUUCcgCcggaGGAAGGgGCCGgACa- -3'
miRNA:   3'- -CUGGAAGuaG----CCUUCCgUGGCgUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.